{ "abstract" : "Bioinformatics Toolkit", "author" : [ "BioPerl Team " ], "dynamic_config" : 1, "generated_by" : "Module::Build version 0.4003, CPAN::Meta::Converter version 2.141520", "license" : [ "perl_5" ], "meta-spec" : { "url" : "http://search.cpan.org/perldoc?CPAN::Meta::Spec", "version" : "2" }, "name" : "BioPerl", "no_index" : { "x_dir" : [ "examples/root/lib" ] }, "prereqs" : { "build" : { "requires" : { "CPAN" : "1.81", "Module::Build" : "0.2805", "Test::Harness" : "2.62", "Test::Most" : "0", "URI::Escape" : "0" } }, "configure" : { "requires" : { "Module::Build" : "0.40" } }, "runtime" : { "recommends" : { "Algorithm::Munkres" : "0", "Array::Compare" : "0", "Bio::Phylo" : "0", "Clone" : "0", "Convert::Binary::C" : "0", "DB_File" : "0", "Error" : "0", "GD" : "0", "Graph" : "0.5", "GraphViz" : "0", "HTML::Entities" : "0", "HTML::HeadParser" : "3", "HTML::TableExtract" : "0", "HTTP::Request::Common" : "0", "IO::Scalar" : "0", "LWP::UserAgent" : "0", "List::MoreUtils" : "0", "PostScript::TextBlock" : "0", "SOAP::Lite" : "0", "SVG" : "2.26", "SVG::Graph" : "0.01", "Set::Scalar" : "0", "Sort::Naturally" : "0", "Spreadsheet::ParseExcel" : "0", "Storable" : "2.05", "Text::ParseWords" : "0", "XML::DOM" : "0", "XML::DOM::XPath" : "0", "XML::LibXML" : "0", "XML::Parser" : "0", "XML::Parser::PerlSAX" : "0", "XML::SAX" : "0.15", "XML::SAX::Writer" : "0", "XML::Simple" : "0", "XML::Twig" : "0", "XML::Writer" : "0.4", "YAML" : "0" }, "requires" : { "Data::Stag" : "0.11", "ExtUtils::Manifest" : "1.52", "IO::String" : "0", "Scalar::Util" : "0", "perl" : "v5.6.1" } } }, "provides" : { "Bio::Align::AlignI" : { "file" : "Bio/Align/AlignI.pm", "version" : "1.006924" }, "Bio::Align::DNAStatistics" : { "file" : "Bio/Align/DNAStatistics.pm", "version" : "1.006924" }, "Bio::Align::Graphics" : { "file" : "Bio/Align/Graphics.pm", "version" : "1.006924" }, "Bio::Align::PairwiseStatistics" : { "file" : "Bio/Align/PairwiseStatistics.pm", "version" : "1.006924" }, "Bio::Align::ProteinStatistics" : { "file" : "Bio/Align/ProteinStatistics.pm", "version" : "1.006924" }, "Bio::Align::StatisticsI" : { "file" : "Bio/Align/StatisticsI.pm", "version" : "1.006924" }, "Bio::Align::Utilities" : { "file" : "Bio/Align/Utilities.pm", "version" : "1.006924" }, "Bio::AlignIO" : { "file" : "Bio/AlignIO.pm", "version" : "1.006924" }, "Bio::AlignIO::Handler::GenericAlignHandler" : { "file" : "Bio/AlignIO/Handler/GenericAlignHandler.pm", "version" : "1.006924" }, "Bio::AlignIO::arp" : { "file" : "Bio/AlignIO/arp.pm", "version" : "1.006924" }, "Bio::AlignIO::bl2seq" : { "file" : "Bio/AlignIO/bl2seq.pm", "version" : "1.006924" }, "Bio::AlignIO::clustalw" : { "file" : "Bio/AlignIO/clustalw.pm", "version" : "1.006924" }, "Bio::AlignIO::emboss" : { "file" : "Bio/AlignIO/emboss.pm", "version" : "1.006924" }, "Bio::AlignIO::fasta" : { "file" : "Bio/AlignIO/fasta.pm", "version" : "1.006924" }, "Bio::AlignIO::largemultifasta" : { "file" : "Bio/AlignIO/largemultifasta.pm", "version" : "1.006924" }, "Bio::AlignIO::maf" : { "file" : "Bio/AlignIO/maf.pm", "version" : "1.006924" }, "Bio::AlignIO::mase" : { "file" : "Bio/AlignIO/mase.pm", "version" : "1.006924" }, "Bio::AlignIO::mega" : { "file" : "Bio/AlignIO/mega.pm", "version" : "1.006924" }, "Bio::AlignIO::meme" : { "file" : "Bio/AlignIO/meme.pm", "version" : "1.006924" }, "Bio::AlignIO::metafasta" : { "file" : "Bio/AlignIO/metafasta.pm", "version" : "1.006924" }, "Bio::AlignIO::msf" : { "file" : "Bio/AlignIO/msf.pm", "version" : "1.006924" }, "Bio::AlignIO::nexml" : { "file" : "Bio/AlignIO/nexml.pm", "version" : "1.006924" }, "Bio::AlignIO::nexus" : { "file" : "Bio/AlignIO/nexus.pm", "version" : "1.006924" }, "Bio::AlignIO::pfam" : { "file" : "Bio/AlignIO/pfam.pm", "version" : "1.006924" }, "Bio::AlignIO::phylip" : { "file" : "Bio/AlignIO/phylip.pm", "version" : "1.006924" }, "Bio::AlignIO::po" : { "file" : "Bio/AlignIO/po.pm", "version" : "1.006924" }, "Bio::AlignIO::proda" : { "file" : "Bio/AlignIO/proda.pm", "version" : "1.006924" }, "Bio::AlignIO::prodom" : { "file" : "Bio/AlignIO/prodom.pm", "version" : "1.006924" }, "Bio::AlignIO::psi" : { "file" : "Bio/AlignIO/psi.pm", "version" : "1.006924" }, "Bio::AlignIO::selex" : { "file" : "Bio/AlignIO/selex.pm", "version" : "1.006924" }, "Bio::AlignIO::stockholm" : { "file" : "Bio/AlignIO/stockholm.pm", "version" : "1.006924" }, "Bio::AlignIO::xmfa" : { "file" : "Bio/AlignIO/xmfa.pm", "version" : "1.006924" }, "Bio::AnalysisI" : { "file" : "Bio/AnalysisI.pm", "version" : "1.006924" }, "Bio::AnalysisI::JobI" : { "file" : "Bio/AnalysisI.pm", "version" : "1.006924" }, "Bio::AnalysisParserI" : { "file" : "Bio/AnalysisParserI.pm", "version" : "1.006924" }, "Bio::AnalysisResultI" : { "file" : "Bio/AnalysisResultI.pm", "version" : "1.006924" }, "Bio::AnnotatableI" : { "file" : "Bio/AnnotatableI.pm", "version" : "1.006924" }, "Bio::Annotation::AnnotationFactory" : { "file" : "Bio/Annotation/AnnotationFactory.pm", "version" : "1.006924" }, "Bio::Annotation::Collection" : { "file" : "Bio/Annotation/Collection.pm", "version" : "1.006924" }, "Bio::Annotation::Comment" : { "file" : "Bio/Annotation/Comment.pm", "version" : "1.006924" }, "Bio::Annotation::DBLink" : { "file" : "Bio/Annotation/DBLink.pm", "version" : "1.006924" }, "Bio::Annotation::OntologyTerm" : { "file" : "Bio/Annotation/OntologyTerm.pm", "version" : "1.006924" }, "Bio::Annotation::Reference" : { "file" : "Bio/Annotation/Reference.pm", "version" : "1.006924" }, "Bio::Annotation::Relation" : { "file" : "Bio/Annotation/Relation.pm", "version" : "1.006924" }, "Bio::Annotation::SimpleValue" : { "file" : "Bio/Annotation/SimpleValue.pm", "version" : "1.006924" }, "Bio::Annotation::StructuredValue" : { "file" : "Bio/Annotation/StructuredValue.pm", "version" : "1.006924" }, "Bio::Annotation::TagTree" : { "file" : "Bio/Annotation/TagTree.pm", "version" : "1.006924" }, "Bio::Annotation::Target" : { "file" : "Bio/Annotation/Target.pm", "version" : "1.006924" }, "Bio::Annotation::Tree" : { "file" : "Bio/Annotation/Tree.pm", "version" : "1.006924" }, "Bio::Annotation::TypeManager" : { "file" : "Bio/Annotation/TypeManager.pm", "version" : "1.006924" }, "Bio::AnnotationCollectionI" : { "file" : "Bio/AnnotationCollectionI.pm", "version" : "1.006924" }, "Bio::AnnotationI" : { "file" : "Bio/AnnotationI.pm", "version" : "1.006924" }, "Bio::Assembly::Contig" : { "file" : "Bio/Assembly/Contig.pm", "version" : "1.006924" }, "Bio::Assembly::ContigAnalysis" : { "file" : "Bio/Assembly/ContigAnalysis.pm", "version" : "1.006924" }, "Bio::Assembly::IO" : { "file" : "Bio/Assembly/IO.pm", "version" : "1.006924" }, "Bio::Assembly::IO::ace" : { "file" : "Bio/Assembly/IO/ace.pm", "version" : "1.006924" }, "Bio::Assembly::IO::bowtie" : { "file" : "Bio/Assembly/IO/bowtie.pm", "version" : "1.006924" }, "Bio::Assembly::IO::maq" : { "file" : "Bio/Assembly/IO/maq.pm", "version" : "1.006924" }, "Bio::Assembly::IO::phrap" : { "file" : "Bio/Assembly/IO/phrap.pm", "version" : "1.006924" }, "Bio::Assembly::IO::sam" : { "file" : "Bio/Assembly/IO/sam.pm", "version" : "1.006924" }, "Bio::Assembly::IO::tigr" : { "file" : "Bio/Assembly/IO/tigr.pm", "version" : "1.006924" }, "Bio::Assembly::Scaffold" : { "file" : "Bio/Assembly/Scaffold.pm", "version" : "1.006924" }, "Bio::Assembly::ScaffoldI" : { "file" : "Bio/Assembly/ScaffoldI.pm", "version" : "1.006924" }, "Bio::Assembly::Singlet" : { "file" : "Bio/Assembly/Singlet.pm", "version" : "1.006924" }, "Bio::Assembly::Tools::ContigSpectrum" : { "file" : "Bio/Assembly/Tools/ContigSpectrum.pm", "version" : "1.006924" }, "Bio::Cluster::ClusterFactory" : { "file" : "Bio/Cluster/ClusterFactory.pm", "version" : "1.006924" }, "Bio::Cluster::FamilyI" : { "file" : "Bio/Cluster/FamilyI.pm", "version" : "1.006924" }, "Bio::Cluster::SequenceFamily" : { "file" : "Bio/Cluster/SequenceFamily.pm", "version" : "1.006924" }, "Bio::Cluster::UniGene" : { "file" : "Bio/Cluster/UniGene.pm", "version" : "1.006924" }, "Bio::Cluster::UniGeneI" : { "file" : "Bio/Cluster/UniGeneI.pm", "version" : "1.006924" }, "Bio::ClusterI" : { "file" : "Bio/ClusterI.pm", "version" : "1.006924" }, "Bio::ClusterIO" : { "file" : "Bio/ClusterIO.pm", "version" : "1.006924" }, "Bio::ClusterIO::dbsnp" : { "file" : "Bio/ClusterIO/dbsnp.pm", "version" : "1.006924" }, "Bio::ClusterIO::unigene" : { "file" : "Bio/ClusterIO/unigene.pm", "version" : "1.006924" }, "Bio::CodonUsage::IO" : { "file" : "Bio/CodonUsage/IO.pm", "version" : "1.006924" }, "Bio::CodonUsage::Table" : { "file" : "Bio/CodonUsage/Table.pm", "version" : "1.006924" }, "Bio::Coordinate::Chain" : { "file" : "Bio/Coordinate/Chain.pm", "version" : "1.006924" }, "Bio::Coordinate::Collection" : { "file" : "Bio/Coordinate/Collection.pm", "version" : "1.006924" }, "Bio::Coordinate::ExtrapolatingPair" : { "file" : "Bio/Coordinate/ExtrapolatingPair.pm", "version" : "1.006924" }, "Bio::Coordinate::GeneMapper" : { "file" : "Bio/Coordinate/GeneMapper.pm", "version" : "1.006924" }, "Bio::Coordinate::Graph" : { "file" : "Bio/Coordinate/Graph.pm", "version" : "1.006924" }, "Bio::Coordinate::MapperI" : { "file" : "Bio/Coordinate/MapperI.pm", "version" : "1.006924" }, "Bio::Coordinate::Pair" : { "file" : "Bio/Coordinate/Pair.pm", "version" : "1.006924" }, "Bio::Coordinate::Result" : { "file" : "Bio/Coordinate/Result.pm", "version" : "1.006924" }, "Bio::Coordinate::Result::Gap" : { "file" : "Bio/Coordinate/Result/Gap.pm", "version" : "1.006924" }, "Bio::Coordinate::Result::Match" : { "file" : "Bio/Coordinate/Result/Match.pm", "version" : "1.006924" }, "Bio::Coordinate::ResultI" : { "file" : "Bio/Coordinate/ResultI.pm", "version" : "1.006924" }, "Bio::Coordinate::Utils" : { "file" : "Bio/Coordinate/Utils.pm", "version" : "1.006924" }, "Bio::DB::Ace" : { "file" : "Bio/DB/Ace.pm", "version" : "1.006924" }, "Bio::DB::BioFetch" : { "file" : "Bio/DB/BioFetch.pm", "version" : "1.006924" }, "Bio::DB::CUTG" : { "file" : "Bio/DB/CUTG.pm", "version" : "1.006924" }, "Bio::DB::DBFetch" : { "file" : "Bio/DB/DBFetch.pm", "version" : "1.006924" }, "Bio::DB::EMBL" : { "file" : "Bio/DB/EMBL.pm", "version" : "1.006924" }, "Bio::DB::EntrezGene" : { "file" : "Bio/DB/EntrezGene.pm", "version" : "1.006924" }, "Bio::DB::Expression" : { "file" : "Bio/DB/Expression.pm", "version" : "1.006924" }, "Bio::DB::Expression::geo" : { "file" : "Bio/DB/Expression/geo.pm", "version" : "1.006924" }, "Bio::DB::Failover" : { "file" : "Bio/DB/Failover.pm", "version" : "1.006924" }, "Bio::DB::Fasta" : { "file" : "Bio/DB/Fasta.pm", "version" : "1.006924" }, "Bio::DB::Fasta::Subdir" : { "file" : "Bio/DB/SeqFeature/Store/berkeleydb.pm", "version" : "1.006924" }, "Bio::DB::FileCache" : { "file" : "Bio/DB/FileCache.pm", "version" : "1.006924" }, "Bio::DB::Flat" : { "file" : "Bio/DB/Flat.pm", "version" : "1.006924" }, "Bio::DB::Flat::BDB" : { "file" : "Bio/DB/Flat/BDB.pm", "version" : "1.006924" }, "Bio::DB::Flat::BDB::embl" : { "file" : "Bio/DB/Flat/BDB/embl.pm", "version" : "1.006924" }, "Bio::DB::Flat::BDB::fasta" : { "file" : "Bio/DB/Flat/BDB/fasta.pm", "version" : "1.006924" }, "Bio::DB::Flat::BDB::genbank" : { "file" : "Bio/DB/Flat/BDB/genbank.pm", "version" : "1.006924" }, "Bio::DB::Flat::BDB::swiss" : { "file" : "Bio/DB/Flat/BDB/swiss.pm", "version" : "1.006924" }, "Bio::DB::Flat::BinarySearch" : { "file" : "Bio/DB/Flat/BinarySearch.pm", "version" : "1.006924" }, "Bio::DB::GFF" : { "file" : "Bio/DB/GFF.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::ace" : { "file" : "Bio/DB/GFF/Adaptor/ace.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::berkeleydb" : { "file" : "Bio/DB/GFF/Adaptor/berkeleydb.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::berkeleydb::iterator" : { "file" : "Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::biofetch" : { "file" : "Bio/DB/GFF/Adaptor/biofetch.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::biofetch_oracle" : { "file" : "Bio/DB/GFF/Adaptor/biofetch_oracle.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi" : { "file" : "Bio/DB/GFF/Adaptor/dbi.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::caching_handle" : { "file" : "Bio/DB/GFF/Adaptor/dbi/caching_handle.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::faux_dbh" : { "file" : "Bio/DB/GFF/Adaptor/dbi/caching_handle.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::iterator" : { "file" : "Bio/DB/GFF/Adaptor/dbi/iterator.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::mysql" : { "file" : "Bio/DB/GFF/Adaptor/dbi/mysql.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::mysqlace" : { "file" : "Bio/DB/GFF/Adaptor/dbi/mysqlace.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::mysqlcmap" : { "file" : "Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::mysqlopt" : { "file" : "Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::oracle" : { "file" : "Bio/DB/GFF/Adaptor/dbi/oracle.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::oracleace" : { "file" : "Bio/DB/GFF/Adaptor/dbi/oracleace.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::pg" : { "file" : "Bio/DB/GFF/Adaptor/dbi/pg.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::dbi::pg_fts" : { "file" : "Bio/DB/GFF/Adaptor/dbi/pg_fts.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::memory" : { "file" : "Bio/DB/GFF/Adaptor/memory.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::memory::feature_serializer" : { "file" : "Bio/DB/GFF/Adaptor/memory/feature_serializer.pm", "version" : "1.006924" }, "Bio::DB::GFF::Adaptor::memory::iterator" : { "file" : "Bio/DB/GFF/Adaptor/memory/iterator.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator" : { "file" : "Bio/DB/GFF/Aggregator.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::alignment" : { "file" : "Bio/DB/GFF/Aggregator/alignment.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::clone" : { "file" : "Bio/DB/GFF/Aggregator/clone.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::coding" : { "file" : "Bio/DB/GFF/Aggregator/coding.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::gene" : { "file" : "Bio/DB/GFF/Aggregator/gene.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::match" : { "file" : "Bio/DB/GFF/Aggregator/match.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::none" : { "file" : "Bio/DB/GFF/Aggregator/none.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::orf" : { "file" : "Bio/DB/GFF/Aggregator/orf.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::processed_transcript" : { "file" : "Bio/DB/GFF/Aggregator/processed_transcript.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::so_transcript" : { "file" : "Bio/DB/GFF/Aggregator/so_transcript.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::transcript" : { "file" : "Bio/DB/GFF/Aggregator/transcript.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_acembly" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_acembly.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_ensgene" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_ensgene.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_genscan" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_genscan.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_refgene" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_refgene.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_sanger22" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_sanger22.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_softberry" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_softberry.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_twinscan" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_twinscan.pm", "version" : "1.006924" }, "Bio::DB::GFF::Aggregator::ucsc_unigene" : { "file" : "Bio/DB/GFF/Aggregator/ucsc_unigene.pm", "version" : "1.006924" }, "Bio::DB::GFF::Featname" : { "file" : "Bio/DB/GFF/Featname.pm", "version" : "1.006924" }, "Bio::DB::GFF::Feature" : { "file" : "Bio/DB/GFF/Feature.pm", "version" : "1.006924" }, "Bio::DB::GFF::FeatureIterator" : { "file" : "Bio/DB/GFF.pm", "version" : "1.006924" }, "Bio::DB::GFF::Homol" : { "file" : "Bio/DB/GFF/Homol.pm", "version" : "1.006924" }, "Bio::DB::GFF::ID_Iterator" : { "file" : "Bio/DB/GFF.pm", "version" : "1.006924" }, "Bio::DB::GFF::RelSegment" : { "file" : "Bio/DB/GFF/RelSegment.pm", "version" : "1.006924" }, "Bio::DB::GFF::Segment" : { "file" : "Bio/DB/GFF/Segment.pm", "version" : "1.006924" }, "Bio::DB::GFF::Typename" : { "file" : "Bio/DB/GFF/Typename.pm", "version" : "1.006924" }, "Bio::DB::GFF::Util::Binning" : { "file" : "Bio/DB/GFF/Util/Binning.pm", "version" : "1.006924" }, "Bio::DB::GFF::Util::Rearrange" : { "file" : "Bio/DB/GFF/Util/Rearrange.pm", "version" : "1.006924" }, "Bio::DB::GenBank" : { "file" : "Bio/DB/GenBank.pm", "version" : "1.006924" }, "Bio::DB::GenPept" : { "file" : "Bio/DB/GenPept.pm", "version" : "1.006924" }, "Bio::DB::GenericWebAgent" : { "file" : "Bio/DB/GenericWebAgent.pm", "version" : "1.006924" }, "Bio::DB::HIV" : { "file" : "Bio/DB/HIV.pm", "version" : "1.006924" }, "Bio::DB::HIV::HIVAnnotProcessor" : { "file" : "Bio/DB/HIV/HIVAnnotProcessor.pm", "version" : "1.006924" }, "Bio::DB::HIV::HIVQueryHelper" : { "file" : "Bio/DB/HIV/HIVQueryHelper.pm", "version" : "1.006924" }, "Bio::DB::InMemoryCache" : { "file" : "Bio/DB/InMemoryCache.pm", "version" : "1.006924" }, "Bio::DB::Indexed::Stream" : { "file" : "Bio/DB/IndexedBase.pm", "version" : "1.006924" }, "Bio::DB::IndexedBase" : { "file" : "Bio/DB/IndexedBase.pm", "version" : "1.006924" }, "Bio::DB::LocationI" : { "file" : "Bio/DB/LocationI.pm", "version" : "1.006924" }, "Bio::DB::MeSH" : { "file" : "Bio/DB/MeSH.pm", "version" : "1.006924" }, "Bio::DB::NCBIHelper" : { "file" : "Bio/DB/NCBIHelper.pm", "version" : "1.006924" }, "Bio::DB::Qual" : { "file" : "Bio/DB/Qual.pm", "version" : "1.006924" }, "Bio::DB::Query::GenBank" : { "file" : "Bio/DB/Query/GenBank.pm", "version" : "1.006924" }, "Bio::DB::Query::HIVQuery" : { "file" : "Bio/DB/Query/HIVQuery.pm", "version" : "1.006924" }, "Bio::DB::Query::WebQuery" : { "file" : "Bio/DB/Query/WebQuery.pm", "version" : "1.006924" }, "Bio::DB::QueryI" : { "file" : "Bio/DB/QueryI.pm", "version" : "1.006924" }, "Bio::DB::RandomAccessI" : { "file" : "Bio/DB/RandomAccessI.pm", "version" : "1.006924" }, "Bio::DB::RefSeq" : { "file" : "Bio/DB/RefSeq.pm", "version" : "1.006924" }, "Bio::DB::ReferenceI" : { "file" : "Bio/DB/ReferenceI.pm", "version" : "1.006924" }, "Bio::DB::Registry" : { "file" : "Bio/DB/Registry.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature" : { "file" : "Bio/DB/SeqFeature.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::NormalizedFeature" : { "file" : "Bio/DB/SeqFeature/NormalizedFeature.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::NormalizedFeatureI" : { "file" : "Bio/DB/SeqFeature/NormalizedFeatureI.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::NormalizedTableFeatureI" : { "file" : "Bio/DB/SeqFeature/NormalizedTableFeatureI.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Segment" : { "file" : "Bio/DB/SeqFeature/Segment.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store" : { "file" : "Bio/DB/SeqFeature/Store.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::DBI::Iterator" : { "file" : "Bio/DB/SeqFeature/Store/DBI/Iterator.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::DBI::Pg" : { "file" : "Bio/DB/SeqFeature/Store/DBI/Pg.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::DBI::SQLite" : { "file" : "Bio/DB/SeqFeature/Store/DBI/SQLite.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::DBI::mysql" : { "file" : "Bio/DB/SeqFeature/Store/DBI/mysql.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::FeatureFileLoader" : { "file" : "Bio/DB/SeqFeature/Store/FeatureFileLoader.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::FeatureIterator" : { "file" : "Bio/DB/SeqFeature/Store.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::GFF2Loader" : { "file" : "Bio/DB/SeqFeature/Store/GFF2Loader.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::GFF3Loader" : { "file" : "Bio/DB/SeqFeature/Store/GFF3Loader.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::LoadHelper" : { "file" : "Bio/DB/SeqFeature/Store/LoadHelper.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::Loader" : { "file" : "Bio/DB/SeqFeature/Store/Loader.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::bdb" : { "file" : "Bio/DB/SeqFeature/Store/bdb.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::berkeleydb" : { "file" : "Bio/DB/SeqFeature/Store/berkeleydb.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::berkeleydb3" : { "file" : "Bio/DB/SeqFeature/Store/berkeleydb3.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::berkeleydb::Iterator" : { "file" : "Bio/DB/SeqFeature/Store/berkeleydb.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::memory" : { "file" : "Bio/DB/SeqFeature/Store/memory.pm", "version" : "1.006924" }, "Bio::DB::SeqFeature::Store::memory::Iterator" : { "file" : "Bio/DB/SeqFeature/Store/memory.pm", "version" : "1.006924" }, "Bio::DB::SeqHound" : { "file" : "Bio/DB/SeqHound.pm", "version" : "1.006924" }, "Bio::DB::SeqI" : { "file" : "Bio/DB/SeqI.pm", "version" : "1.006924" }, "Bio::DB::SeqVersion" : { "file" : "Bio/DB/SeqVersion.pm", "version" : "1.006924" }, "Bio::DB::SeqVersion::gi" : { "file" : "Bio/DB/SeqVersion/gi.pm", "version" : "1.006924" }, "Bio::DB::SwissProt" : { "file" : "Bio/DB/SwissProt.pm", "version" : "1.006924" }, "Bio::DB::TFBS" : { "file" : "Bio/DB/TFBS.pm", "version" : "1.006924" }, "Bio::DB::TFBS::transfac_pro" : { "file" : "Bio/DB/TFBS/transfac_pro.pm", "version" : "1.006924" }, "Bio::DB::Taxonomy" : { "file" : "Bio/DB/Taxonomy.pm", "version" : "1.006924" }, "Bio::DB::Taxonomy::entrez" : { "file" : "Bio/DB/Taxonomy/entrez.pm", "version" : "1.006924" }, "Bio::DB::Taxonomy::flatfile" : { "file" : "Bio/DB/Taxonomy/flatfile.pm", "version" : "1.006924" }, "Bio::DB::Taxonomy::greengenes" : { "file" : "Bio/DB/Taxonomy/greengenes.pm", "version" : "1.006924" }, "Bio::DB::Taxonomy::list" : { "file" : "Bio/DB/Taxonomy/list.pm", "version" : "1.006924" }, "Bio::DB::Taxonomy::silva" : { "file" : "Bio/DB/Taxonomy/silva.pm", "version" : "1.006924" }, "Bio::DB::Universal" : { "file" : "Bio/DB/Universal.pm", "version" : "1.006924" }, "Bio::DB::UpdateableSeqI" : { "file" : "Bio/DB/UpdateableSeqI.pm", "version" : "1.006924" }, "Bio::DB::WebDBSeqI" : { "file" : "Bio/DB/WebDBSeqI.pm", "version" : "1.006924" }, "Bio::DBLinkContainerI" : { "file" : "Bio/DBLinkContainerI.pm", "version" : "1.006924" }, "Bio::Das::FeatureTypeI" : { "file" : "Bio/Das/FeatureTypeI.pm", "version" : "1.006924" }, "Bio::Das::SegmentI" : { "file" : "Bio/Das/SegmentI.pm", "version" : "1.006924" }, "Bio::DasI" : { "file" : "Bio/DasI.pm", "version" : "1.006924" }, "Bio::DescribableI" : { "file" : "Bio/DescribableI.pm", "version" : "1.006924" }, "Bio::Draw::Pictogram" : { "file" : "Bio/Draw/Pictogram.pm", "version" : "1.006924" }, "Bio::Event::EventGeneratorI" : { "file" : "Bio/Event/EventGeneratorI.pm", "version" : "1.006924" }, "Bio::Event::EventHandlerI" : { "file" : "Bio/Event/EventHandlerI.pm", "version" : "1.006924" }, "Bio::Factory::AnalysisI" : { "file" : "Bio/Factory/AnalysisI.pm", "version" : "1.006924" }, "Bio::Factory::ApplicationFactoryI" : { "file" : "Bio/Factory/ApplicationFactoryI.pm", "version" : "1.006924" }, "Bio::Factory::DriverFactory" : { "file" : "Bio/Factory/DriverFactory.pm", "version" : "1.006924" }, "Bio::Factory::FTLocationFactory" : { "file" : "Bio/Factory/FTLocationFactory.pm", "version" : "1.006924" }, "Bio::Factory::LocationFactoryI" : { "file" : "Bio/Factory/LocationFactoryI.pm", "version" : "1.006924" }, "Bio::Factory::MapFactoryI" : { "file" : "Bio/Factory/MapFactoryI.pm", "version" : "1.006924" }, "Bio::Factory::ObjectBuilderI" : { "file" : "Bio/Factory/ObjectBuilderI.pm", "version" : "1.006924" }, "Bio::Factory::ObjectFactory" : { "file" : "Bio/Factory/ObjectFactory.pm", "version" : "1.006924" }, "Bio::Factory::ObjectFactoryI" : { "file" : "Bio/Factory/ObjectFactoryI.pm", "version" : "1.006924" }, "Bio::Factory::SeqAnalysisParserFactory" : { "file" : "Bio/Factory/SeqAnalysisParserFactory.pm", "version" : "1.006924" }, "Bio::Factory::SeqAnalysisParserFactoryI" : { "file" : "Bio/Factory/SeqAnalysisParserFactoryI.pm", "version" : "1.006924" }, "Bio::Factory::SequenceFactoryI" : { "file" : "Bio/Factory/SequenceFactoryI.pm", "version" : "1.006924" }, "Bio::Factory::SequenceProcessorI" : { "file" : "Bio/Factory/SequenceProcessorI.pm", "version" : "1.006924" }, "Bio::Factory::SequenceStreamI" : { "file" : "Bio/Factory/SequenceStreamI.pm", "version" : "1.006924" }, "Bio::Factory::TreeFactoryI" : { "file" : "Bio/Factory/TreeFactoryI.pm", "version" : "1.006924" }, "Bio::FeatureHolderI" : { "file" : "Bio/FeatureHolderI.pm", "version" : "1.006924" }, "Bio::HandlerBaseI" : { "file" : "Bio/HandlerBaseI.pm", "version" : "1.006924" }, "Bio::IdCollectionI" : { "file" : "Bio/IdCollectionI.pm", "version" : "1.006924" }, "Bio::IdentifiableI" : { "file" : "Bio/IdentifiableI.pm", "version" : "1.006924" }, "Bio::Index::Abstract" : { "file" : "Bio/Index/Abstract.pm", "version" : "1.006924" }, "Bio::Index::AbstractSeq" : { "file" : "Bio/Index/AbstractSeq.pm", "version" : "1.006924" }, "Bio::Index::Blast" : { "file" : "Bio/Index/Blast.pm", "version" : "1.006924" }, "Bio::Index::BlastTable" : { "file" : "Bio/Index/BlastTable.pm", "version" : "1.006924" }, "Bio::Index::EMBL" : { "file" : "Bio/Index/EMBL.pm", "version" : "1.006924" }, "Bio::Index::Fasta" : { "file" : "Bio/Index/Fasta.pm", "version" : "1.006924" }, "Bio::Index::Fastq" : { "file" : "Bio/Index/Fastq.pm", "version" : "1.006924" }, "Bio::Index::GenBank" : { "file" : "Bio/Index/GenBank.pm", "version" : "1.006924" }, "Bio::Index::Hmmer" : { "file" : "Bio/Index/Hmmer.pm", "version" : "1.006924" }, "Bio::Index::Qual" : { "file" : "Bio/Index/Qual.pm", "version" : "1.006924" }, "Bio::Index::Stockholm" : { "file" : "Bio/Index/Stockholm.pm", "version" : "1.006924" }, "Bio::Index::SwissPfam" : { "file" : "Bio/Index/SwissPfam.pm", "version" : "1.006924" }, "Bio::Index::Swissprot" : { "file" : "Bio/Index/Swissprot.pm", "version" : "1.006924" }, "Bio::LiveSeq::AARange" : { "file" : "Bio/LiveSeq/AARange.pm", "version" : "1.006924" }, "Bio::LiveSeq::Chain" : { "file" : "Bio/LiveSeq/Chain.pm", "version" : "1.006924" }, "Bio::LiveSeq::ChainI" : { "file" : "Bio/LiveSeq/ChainI.pm", "version" : "1.006924" }, "Bio::LiveSeq::DNA" : { "file" : "Bio/LiveSeq/DNA.pm", "version" : "1.006924" }, "Bio::LiveSeq::Exon" : { "file" : "Bio/LiveSeq/Exon.pm", "version" : "1.006924" }, "Bio::LiveSeq::Gene" : { "file" : "Bio/LiveSeq/Gene.pm", "version" : "1.006924" }, "Bio::LiveSeq::IO::BioPerl" : { "file" : "Bio/LiveSeq/IO/BioPerl.pm", "version" : "1.006924" }, "Bio::LiveSeq::IO::Loader" : { "file" : "Bio/LiveSeq/IO/Loader.pm", "version" : "1.006924" }, "Bio::LiveSeq::Intron" : { "file" : "Bio/LiveSeq/Intron.pm", "version" : "1.006924" }, "Bio::LiveSeq::Mutation" : { "file" : "Bio/LiveSeq/Mutation.pm", "version" : "1.006924" }, "Bio::LiveSeq::Mutator" : { "file" : "Bio/LiveSeq/Mutator.pm", "version" : "1.006924" }, "Bio::LiveSeq::Prim_Transcript" : { "file" : "Bio/LiveSeq/Prim_Transcript.pm", "version" : "1.006924" }, "Bio::LiveSeq::Range" : { "file" : "Bio/LiveSeq/Range.pm", "version" : "1.006924" }, "Bio::LiveSeq::Repeat_Region" : { "file" : "Bio/LiveSeq/Repeat_Region.pm", "version" : "1.006924" }, "Bio::LiveSeq::Repeat_Unit" : { "file" : "Bio/LiveSeq/Repeat_Unit.pm", "version" : "1.006924" }, "Bio::LiveSeq::SeqI" : { "file" : "Bio/LiveSeq/SeqI.pm", "version" : "1.006924" }, "Bio::LiveSeq::Transcript" : { "file" : "Bio/LiveSeq/Transcript.pm", "version" : "1.006924" }, "Bio::LiveSeq::Translation" : { "file" : "Bio/LiveSeq/Translation.pm", "version" : "1.006924" }, "Bio::LocatableSeq" : { "file" : "Bio/Search/Tiling/MapTileUtils.pm", "version" : "1.006924" }, "Bio::Location::Atomic" : { "file" : "Bio/Location/Atomic.pm", "version" : "1.006924" }, "Bio::Location::AvWithinCoordPolicy" : { "file" : "Bio/Location/AvWithinCoordPolicy.pm", "version" : "1.006924" }, "Bio::Location::CoordinatePolicyI" : { "file" : "Bio/Location/CoordinatePolicyI.pm", "version" : "1.006924" }, "Bio::Location::Fuzzy" : { "file" : "Bio/Location/Fuzzy.pm", "version" : "1.006924" }, "Bio::Location::FuzzyLocationI" : { "file" : "Bio/Location/FuzzyLocationI.pm", "version" : "1.006924" }, "Bio::Location::NarrowestCoordPolicy" : { "file" : "Bio/Location/NarrowestCoordPolicy.pm", "version" : "1.006924" }, "Bio::Location::Simple" : { "file" : "Bio/Location/Simple.pm", "version" : "1.006924" }, "Bio::Location::Split" : { "file" : "Bio/Location/Split.pm", "version" : "1.006924" }, "Bio::Location::SplitLocationI" : { "file" : "Bio/Location/SplitLocationI.pm", "version" : "1.006924" }, "Bio::Location::WidestCoordPolicy" : { "file" : "Bio/Location/WidestCoordPolicy.pm", "version" : "1.006924" }, "Bio::LocationI" : { "file" : "Bio/LocationI.pm", "version" : "1.006924" }, "Bio::Map::Clone" : { "file" : "Bio/Map/Clone.pm", "version" : "1.006924" }, "Bio::Map::Contig" : { "file" : "Bio/Map/Contig.pm", "version" : "1.006924" }, "Bio::Map::CytoMap" : { "file" : "Bio/Map/CytoMap.pm", "version" : "1.006924" }, "Bio::Map::CytoMarker" : { "file" : "Bio/Map/CytoMarker.pm", "version" : "1.006924" }, "Bio::Map::CytoPosition" : { "file" : "Bio/Map/CytoPosition.pm", "version" : "1.006924" }, "Bio::Map::EntityI" : { "file" : "Bio/Map/EntityI.pm", "version" : "1.006924" }, "Bio::Map::FPCMarker" : { "file" : "Bio/Map/FPCMarker.pm", "version" : "1.006924" }, "Bio::Map::Gene" : { "file" : "Bio/Map/Gene.pm", "version" : "1.006924" }, "Bio::Map::GeneMap" : { "file" : "Bio/Map/GeneMap.pm", "version" : "1.006924" }, "Bio::Map::GenePosition" : { "file" : "Bio/Map/GenePosition.pm", "version" : "1.006924" }, "Bio::Map::GeneRelative" : { "file" : "Bio/Map/GeneRelative.pm", "version" : "1.006924" }, "Bio::Map::LinkageMap" : { "file" : "Bio/Map/LinkageMap.pm", "version" : "1.006924" }, "Bio::Map::LinkagePosition" : { "file" : "Bio/Map/LinkagePosition.pm", "version" : "1.006924" }, "Bio::Map::MapI" : { "file" : "Bio/Map/MapI.pm", "version" : "1.006924" }, "Bio::Map::Mappable" : { "file" : "Bio/Map/Mappable.pm", "version" : "1.006924" }, "Bio::Map::MappableI" : { "file" : "Bio/Map/MappableI.pm", "version" : "1.006924" }, "Bio::Map::Marker" : { "file" : "Bio/Map/Marker.pm", "version" : "1.006924" }, "Bio::Map::MarkerI" : { "file" : "Bio/Map/MarkerI.pm", "version" : "1.006924" }, "Bio::Map::Microsatellite" : { "file" : "Bio/Map/Microsatellite.pm", "version" : "1.006924" }, "Bio::Map::OrderedPosition" : { "file" : "Bio/Map/OrderedPosition.pm", "version" : "1.006924" }, "Bio::Map::OrderedPositionWithDistance" : { "file" : "Bio/Map/OrderedPositionWithDistance.pm", "version" : "1.006924" }, "Bio::Map::Physical" : { "file" : "Bio/Map/Physical.pm", "version" : "1.006924" }, "Bio::Map::Position" : { "file" : "Bio/Map/Position.pm", "version" : "1.006924" }, "Bio::Map::PositionHandler" : { "file" : "Bio/Map/PositionHandler.pm", "version" : "1.006924" }, "Bio::Map::PositionHandlerI" : { "file" : "Bio/Map/PositionHandlerI.pm", "version" : "1.006924" }, "Bio::Map::PositionI" : { "file" : "Bio/Map/PositionI.pm", "version" : "1.006924" }, "Bio::Map::PositionWithSequence" : { "file" : "Bio/Map/PositionWithSequence.pm", "version" : "1.006924" }, "Bio::Map::Prediction" : { "file" : "Bio/Map/Prediction.pm", "version" : "1.006924" }, "Bio::Map::Relative" : { "file" : "Bio/Map/Relative.pm", "version" : "1.006924" }, "Bio::Map::RelativeI" : { "file" : "Bio/Map/RelativeI.pm", "version" : "1.006924" }, "Bio::Map::SimpleMap" : { "file" : "Bio/Map/SimpleMap.pm", "version" : "1.006924" }, "Bio::Map::TranscriptionFactor" : { "file" : "Bio/Map/TranscriptionFactor.pm", "version" : "1.006924" }, "Bio::MapIO" : { "file" : "Bio/MapIO.pm", "version" : "1.006924" }, "Bio::MapIO::fpc" : { "file" : "Bio/MapIO/fpc.pm", "version" : "1.006924" }, "Bio::MapIO::mapmaker" : { "file" : "Bio/MapIO/mapmaker.pm", "version" : "1.006924" }, "Bio::Matrix::Generic" : { "file" : "Bio/Matrix/Generic.pm", "version" : "1.006924" }, "Bio::Matrix::IO" : { "file" : "Bio/Matrix/IO.pm", "version" : "1.006924" }, "Bio::Matrix::IO::mlagan" : { "file" : "Bio/Matrix/IO/mlagan.pm", "version" : "1.006924" }, "Bio::Matrix::IO::phylip" : { "file" : "Bio/Matrix/IO/phylip.pm", "version" : "1.006924" }, "Bio::Matrix::IO::scoring" : { "file" : "Bio/Matrix/IO/scoring.pm", "version" : "1.006924" }, "Bio::Matrix::MatrixI" : { "file" : "Bio/Matrix/MatrixI.pm", "version" : "1.006924" }, "Bio::Matrix::Mlagan" : { "file" : "Bio/Matrix/Mlagan.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::IO" : { "file" : "Bio/Matrix/PSM/IO.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::IO::mast" : { "file" : "Bio/Matrix/PSM/IO/mast.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::IO::masta" : { "file" : "Bio/Matrix/PSM/IO/masta.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::IO::meme" : { "file" : "Bio/Matrix/PSM/IO/meme.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::IO::psiblast" : { "file" : "Bio/Matrix/PSM/IO/psiblast.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::IO::transfac" : { "file" : "Bio/Matrix/PSM/IO/transfac.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::InstanceSite" : { "file" : "Bio/Matrix/PSM/InstanceSite.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::InstanceSiteI" : { "file" : "Bio/Matrix/PSM/InstanceSiteI.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::ProtMatrix" : { "file" : "Bio/Matrix/PSM/ProtMatrix.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::ProtPsm" : { "file" : "Bio/Matrix/PSM/ProtPsm.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::Psm" : { "file" : "Bio/Matrix/PSM/Psm.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::PsmHeader" : { "file" : "Bio/Matrix/PSM/PsmHeader.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::PsmHeaderI" : { "file" : "Bio/Matrix/PSM/PsmHeaderI.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::PsmI" : { "file" : "Bio/Matrix/PSM/PsmI.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::SiteMatrix" : { "file" : "Bio/Matrix/PSM/SiteMatrix.pm", "version" : "1.006924" }, "Bio::Matrix::PSM::SiteMatrixI" : { "file" : "Bio/Matrix/PSM/SiteMatrixI.pm", "version" : "1.006924" }, "Bio::Matrix::PhylipDist" : { "file" : "Bio/Matrix/PhylipDist.pm", "version" : "1.006924" }, "Bio::Matrix::Scoring" : { "file" : "Bio/Matrix/Scoring.pm", "version" : "1.006924" }, "Bio::MolEvol::CodonModel" : { "file" : "Bio/MolEvol/CodonModel.pm", "version" : "1.006924" }, "Bio::Nexml::Factory" : { "file" : "Bio/Nexml/Factory.pm", "version" : "1.006924" }, "Bio::NexmlIO" : { "file" : "Bio/NexmlIO.pm", "version" : "1.006924" }, "Bio::Ontology::DocumentRegistry" : { "file" : "Bio/Ontology/DocumentRegistry.pm", "version" : "1.006924" }, "Bio::Ontology::GOterm" : { "file" : "Bio/Ontology/GOterm.pm", "version" : "1.006924" }, "Bio::Ontology::InterProTerm" : { "file" : "Bio/Ontology/InterProTerm.pm", "version" : "1.006924" }, "Bio::Ontology::OBOEngine" : { "file" : "Bio/Ontology/OBOEngine.pm", "version" : "1.006924" }, "Bio::Ontology::OBOterm" : { "file" : "Bio/Ontology/OBOterm.pm", "version" : "1.006924" }, "Bio::Ontology::Ontology" : { "file" : "Bio/Ontology/Ontology.pm", "version" : "1.006924" }, "Bio::Ontology::OntologyEngineI" : { "file" : "Bio/Ontology/OntologyEngineI.pm", "version" : "1.006924" }, "Bio::Ontology::OntologyI" : { "file" : "Bio/Ontology/OntologyI.pm", "version" : "1.006924" }, "Bio::Ontology::OntologyStore" : { "file" : "Bio/Ontology/OntologyStore.pm", "version" : "1.006924" }, "Bio::Ontology::Path" : { "file" : "Bio/Ontology/Path.pm", "version" : "1.006924" }, "Bio::Ontology::PathI" : { "file" : "Bio/Ontology/PathI.pm", "version" : "1.006924" }, "Bio::Ontology::Relationship" : { "file" : "Bio/Ontology/Relationship.pm", "version" : "1.006924" }, "Bio::Ontology::RelationshipFactory" : { "file" : "Bio/Ontology/RelationshipFactory.pm", "version" : "1.006924" }, "Bio::Ontology::RelationshipI" : { "file" : "Bio/Ontology/RelationshipI.pm", "version" : "1.006924" }, "Bio::Ontology::RelationshipType" : { "file" : "Bio/Ontology/RelationshipType.pm", "version" : "1.006924" }, "Bio::Ontology::SimpleGOEngine::GraphAdaptor" : { "file" : "Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm", "version" : "1.006924" }, "Bio::Ontology::SimpleOntologyEngine" : { "file" : "Bio/Ontology/SimpleOntologyEngine.pm", "version" : "1.006924" }, "Bio::Ontology::Term" : { "file" : "Bio/Ontology/Term.pm", "version" : "1.006924" }, "Bio::Ontology::TermFactory" : { "file" : "Bio/Ontology/TermFactory.pm", "version" : "1.006924" }, "Bio::Ontology::TermI" : { "file" : "Bio/Ontology/TermI.pm", "version" : "1.006924" }, "Bio::OntologyIO" : { "file" : "Bio/OntologyIO.pm", "version" : "1.006924" }, "Bio::OntologyIO::Handlers::BaseSAXHandler" : { "file" : "Bio/OntologyIO/Handlers/BaseSAXHandler.pm", "version" : "1.006924" }, "Bio::OntologyIO::Handlers::InterProHandler" : { "file" : "Bio/OntologyIO/Handlers/InterProHandler.pm", "version" : "1.006924" }, "Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler" : { "file" : "Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm", "version" : "1.006924" }, "Bio::OntologyIO::InterProParser" : { "file" : "Bio/OntologyIO/InterProParser.pm", "version" : "1.006924" }, "Bio::OntologyIO::dagflat" : { "file" : "Bio/OntologyIO/dagflat.pm", "version" : "1.006924" }, "Bio::OntologyIO::goflat" : { "file" : "Bio/OntologyIO/goflat.pm", "version" : "1.006924" }, "Bio::OntologyIO::obo" : { "file" : "Bio/OntologyIO/obo.pm", "version" : "1.006924" }, "Bio::OntologyIO::simplehierarchy" : { "file" : "Bio/OntologyIO/simplehierarchy.pm", "version" : "1.006924" }, "Bio::OntologyIO::soflat" : { "file" : "Bio/OntologyIO/soflat.pm", "version" : "1.006924" }, "Bio::ParameterBaseI" : { "file" : "Bio/ParameterBaseI.pm", "version" : "1.006924" }, "Bio::Perl" : { "file" : "Bio/Perl.pm", "version" : "1.006924" }, "Bio::Phenotype::Correlate" : { "file" : "Bio/Phenotype/Correlate.pm", "version" : "1.006924" }, "Bio::Phenotype::MeSH::Term" : { "file" : "Bio/Phenotype/MeSH/Term.pm", "version" : "1.006924" }, "Bio::Phenotype::MeSH::Twig" : { "file" : "Bio/Phenotype/MeSH/Twig.pm", "version" : "1.006924" }, "Bio::Phenotype::Measure" : { "file" : "Bio/Phenotype/Measure.pm", "version" : "1.006924" }, "Bio::Phenotype::OMIM::MiniMIMentry" : { "file" : "Bio/Phenotype/OMIM/MiniMIMentry.pm", "version" : "1.006924" }, "Bio::Phenotype::OMIM::OMIMentry" : { "file" : "Bio/Phenotype/OMIM/OMIMentry.pm", "version" : "1.006924" }, "Bio::Phenotype::OMIM::OMIMentryAllelicVariant" : { "file" : "Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm", "version" : "1.006924" }, "Bio::Phenotype::OMIM::OMIMparser" : { "file" : "Bio/Phenotype/OMIM/OMIMparser.pm", "version" : "1.006924" }, "Bio::Phenotype::Phenotype" : { "file" : "Bio/Phenotype/Phenotype.pm", "version" : "1.006924" }, "Bio::Phenotype::PhenotypeI" : { "file" : "Bio/Phenotype/PhenotypeI.pm", "version" : "1.006924" }, "Bio::PhyloNetwork" : { "file" : "Bio/PhyloNetwork.pm", "version" : "1.006924" }, "Bio::PhyloNetwork::Factory" : { "file" : "Bio/PhyloNetwork/Factory.pm", "version" : "1.006924" }, "Bio::PhyloNetwork::FactoryX" : { "file" : "Bio/PhyloNetwork/FactoryX.pm", "version" : "1.006924" }, "Bio::PhyloNetwork::GraphViz" : { "file" : "Bio/PhyloNetwork/GraphViz.pm", "version" : "1.006924" }, "Bio::PhyloNetwork::RandomFactory" : { "file" : "Bio/PhyloNetwork/RandomFactory.pm", "version" : "1.006924" }, "Bio::PhyloNetwork::TreeFactory" : { "file" : "Bio/PhyloNetwork/TreeFactory.pm", "version" : "1.006924" }, "Bio::PhyloNetwork::TreeFactoryMulti" : { "file" : "Bio/PhyloNetwork/TreeFactoryMulti.pm", "version" : "1.006924" }, "Bio::PhyloNetwork::TreeFactoryX" : { "file" : "Bio/PhyloNetwork/TreeFactoryX.pm", "version" : "1.006924" }, "Bio::PhyloNetwork::muVector" : { "file" : "Bio/PhyloNetwork/muVector.pm", "version" : "1.006924" }, "Bio::PopGen::Genotype" : { "file" : "Bio/PopGen/Genotype.pm", "version" : "1.006924" }, "Bio::PopGen::GenotypeI" : { "file" : "Bio/PopGen/GenotypeI.pm", "version" : "1.006924" }, "Bio::PopGen::HtSNP" : { "file" : "Bio/PopGen/HtSNP.pm", "version" : "1.006924" }, "Bio::PopGen::IO" : { "file" : "Bio/PopGen/IO.pm", "version" : "1.006924" }, "Bio::PopGen::IO::csv" : { "file" : "Bio/PopGen/IO/csv.pm", "version" : "1.006924" }, "Bio::PopGen::IO::hapmap" : { "file" : "Bio/PopGen/IO/hapmap.pm", "version" : "1.006924" }, "Bio::PopGen::IO::phase" : { "file" : "Bio/PopGen/IO/phase.pm", "version" : "1.006924" }, "Bio::PopGen::IO::prettybase" : { "file" : "Bio/PopGen/IO/prettybase.pm", "version" : "1.006924" }, "Bio::PopGen::Individual" : { "file" : "Bio/PopGen/Individual.pm", "version" : "1.006924" }, "Bio::PopGen::IndividualI" : { "file" : "Bio/PopGen/IndividualI.pm", "version" : "1.006924" }, "Bio::PopGen::Marker" : { "file" : "Bio/PopGen/Marker.pm", "version" : "1.006924" }, "Bio::PopGen::MarkerI" : { "file" : "Bio/PopGen/MarkerI.pm", "version" : "1.006924" }, "Bio::PopGen::PopStats" : { "file" : "Bio/PopGen/PopStats.pm", "version" : "1.006924" }, "Bio::PopGen::Population" : { "file" : "Bio/PopGen/Population.pm", "version" : "1.006924" }, "Bio::PopGen::PopulationI" : { "file" : "Bio/PopGen/PopulationI.pm", "version" : "1.006924" }, "Bio::PopGen::Simulation::Coalescent" : { "file" : "Bio/PopGen/Simulation/Coalescent.pm", "version" : "1.006924" }, "Bio::PopGen::Simulation::GeneticDrift" : { "file" : "Bio/PopGen/Simulation/GeneticDrift.pm", "version" : "1.006924" }, "Bio::PopGen::Statistics" : { "file" : "Bio/PopGen/Statistics.pm", "version" : "1.006924" }, "Bio::PopGen::TagHaplotype" : { "file" : "Bio/PopGen/TagHaplotype.pm", "version" : "1.006924" }, "Bio::PopGen::Utilities" : { "file" : "Bio/PopGen/Utilities.pm", "version" : "1.006924" }, "Bio::PrimarySeq" : { "file" : "Bio/PrimarySeq.pm", "version" : "1.006924" }, "Bio::PrimarySeq::Fasta" : { "file" : "Bio/DB/Fasta.pm", "version" : "1.006924" }, "Bio::PrimarySeqI" : { "file" : "Bio/PrimarySeqI.pm", "version" : "1.006924" }, "Bio::PullParserI" : { "file" : "Bio/PullParserI.pm", "version" : "1.006924" }, "Bio::Range" : { "file" : "Bio/Range.pm", "version" : "1.006924" }, "Bio::RangeI" : { "file" : "Bio/RangeI.pm", "version" : "1.006924" }, "Bio::Restriction::Analysis" : { "file" : "Bio/Restriction/Analysis.pm", "version" : "1.006924" }, "Bio::Restriction::Enzyme" : { "file" : "Bio/Restriction/Enzyme.pm", "version" : "1.006924" }, "Bio::Restriction::Enzyme::MultiCut" : { "file" : "Bio/Restriction/Enzyme/MultiCut.pm", "version" : "1.006924" }, "Bio::Restriction::Enzyme::MultiSite" : { "file" : "Bio/Restriction/Enzyme/MultiSite.pm", "version" : "1.006924" }, "Bio::Restriction::EnzymeCollection" : { "file" : "Bio/Restriction/EnzymeCollection.pm", "version" : "1.006924" }, "Bio::Restriction::EnzymeI" : { "file" : "Bio/Restriction/EnzymeI.pm", "version" : "1.006924" }, "Bio::Restriction::IO" : { "file" : "Bio/Restriction/IO.pm", "version" : "1.006924" }, "Bio::Restriction::IO::bairoch" : { "file" : "Bio/Restriction/IO/bairoch.pm", "version" : "1.006924" }, "Bio::Restriction::IO::base" : { "file" : "Bio/Restriction/IO/base.pm", "version" : "1.006924" }, "Bio::Restriction::IO::itype2" : { "file" : "Bio/Restriction/IO/itype2.pm", "version" : "1.006924" }, "Bio::Restriction::IO::prototype" : { "file" : "Bio/Restriction/IO/prototype.pm", "version" : "1.006924" }, "Bio::Restriction::IO::withrefm" : { "file" : "Bio/Restriction/IO/withrefm.pm", "version" : "1.006924" }, "Bio::Root::Build" : { "file" : "Bio/Root/Build.pm", "version" : "1.006924" }, "Bio::Root::Exception" : { "file" : "Bio/Root/Exception.pm", "version" : "1.006924" }, "Bio::Root::HTTPget" : { "file" : "Bio/Root/HTTPget.pm", "version" : "1.006924" }, "Bio::Root::IO" : { "file" : "Bio/Root/IO.pm", "version" : "1.006924" }, "Bio::Root::Root" : { "file" : "Bio/Root/Root.pm", "version" : "1.006924" }, "Bio::Root::RootI" : { "file" : "Bio/Root/RootI.pm", "version" : "1.006924" }, "Bio::Root::Storable" : { "file" : "Bio/Root/Storable.pm", "version" : "1.006924" }, "Bio::Root::Test" : { "file" : "Bio/Root/Test.pm", "version" : "1.006924" }, "Bio::Root::Utilities" : { "file" : "Bio/Root/Utilities.pm", "version" : "1.006924" }, "Bio::Root::Version" : { "file" : "Bio/Root/Version.pm", "version" : "1.006924" }, "Bio::Search::BlastStatistics" : { "file" : "Bio/Search/BlastStatistics.pm", "version" : "1.006924" }, "Bio::Search::BlastUtils" : { "file" : "Bio/Search/BlastUtils.pm", "version" : "1.006924" }, "Bio::Search::DatabaseI" : { "file" : "Bio/Search/DatabaseI.pm", "version" : "1.006924" }, "Bio::Search::GenericDatabase" : { "file" : "Bio/Search/GenericDatabase.pm", "version" : "1.006924" }, "Bio::Search::GenericStatistics" : { "file" : "Bio/Search/GenericStatistics.pm", "version" : "1.006924" }, "Bio::Search::HSP::BlastHSP" : { "file" : "Bio/Search/HSP/BlastHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::BlastPullHSP" : { "file" : "Bio/Search/HSP/BlastPullHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::FastaHSP" : { "file" : "Bio/Search/HSP/FastaHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::GenericHSP" : { "file" : "Bio/Search/HSP/GenericHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::HMMERHSP" : { "file" : "Bio/Search/HSP/HMMERHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::HSPFactory" : { "file" : "Bio/Search/HSP/HSPFactory.pm", "version" : "1.006924" }, "Bio::Search::HSP::HSPI" : { "file" : "Bio/Search/Tiling/MapTileUtils.pm", "version" : "1.006924" }, "Bio::Search::HSP::HmmpfamHSP" : { "file" : "Bio/Search/HSP/HmmpfamHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::ModelHSP" : { "file" : "Bio/Search/HSP/ModelHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::PSLHSP" : { "file" : "Bio/Search/HSP/PSLHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::PsiBlastHSP" : { "file" : "Bio/Search/HSP/PsiBlastHSP.pm", "version" : "1.006924" }, "Bio::Search::HSP::PullHSPI" : { "file" : "Bio/Search/HSP/PullHSPI.pm", "version" : "1.006924" }, "Bio::Search::HSP::WABAHSP" : { "file" : "Bio/Search/HSP/WABAHSP.pm", "version" : "1.006924" }, "Bio::Search::Hit::BlastHit" : { "file" : "Bio/Search/Hit/BlastHit.pm", "version" : "1.006924" }, "Bio::Search::Hit::BlastPullHit" : { "file" : "Bio/Search/Hit/BlastPullHit.pm", "version" : "1.006924" }, "Bio::Search::Hit::Fasta" : { "file" : "Bio/Search/Hit/Fasta.pm", "version" : "1.006924" }, "Bio::Search::Hit::GenericHit" : { "file" : "Bio/Search/Hit/GenericHit.pm", "version" : "1.006924" }, "Bio::Search::Hit::HMMERHit" : { "file" : "Bio/Search/Hit/HMMERHit.pm", "version" : "1.006924" }, "Bio::Search::Hit::HitFactory" : { "file" : "Bio/Search/Hit/HitFactory.pm", "version" : "1.006924" }, "Bio::Search::Hit::HitI" : { "file" : "Bio/Search/Hit/HitI.pm", "version" : "1.006924" }, "Bio::Search::Hit::HmmpfamHit" : { "file" : "Bio/Search/Hit/HmmpfamHit.pm", "version" : "1.006924" }, "Bio::Search::Hit::ModelHit" : { "file" : "Bio/Search/Hit/ModelHit.pm", "version" : "1.006924" }, "Bio::Search::Hit::PsiBlastHit" : { "file" : "Bio/Search/Hit/PsiBlastHit.pm", "version" : "1.006924" }, "Bio::Search::Hit::PullHitI" : { "file" : "Bio/Search/Hit/PullHitI.pm", "version" : "1.006924" }, "Bio::Search::Hit::hmmer3Hit" : { "file" : "Bio/Search/Hit/hmmer3Hit.pm", "version" : "1.006924" }, "Bio::Search::Iteration::GenericIteration" : { "file" : "Bio/Search/Iteration/GenericIteration.pm", "version" : "1.006924" }, "Bio::Search::Iteration::IterationI" : { "file" : "Bio/Search/Iteration/IterationI.pm", "version" : "1.006924" }, "Bio::Search::Processor" : { "file" : "Bio/Search/Processor.pm", "version" : "1.006924" }, "Bio::Search::Result::BlastPullResult" : { "file" : "Bio/Search/Result/BlastPullResult.pm", "version" : "1.006924" }, "Bio::Search::Result::BlastResult" : { "file" : "Bio/Search/Result/BlastResult.pm", "version" : "1.006924" }, "Bio::Search::Result::CrossMatchResult" : { "file" : "Bio/Search/Result/CrossMatchResult.pm", "version" : "1.006924" }, "Bio::Search::Result::GenericResult" : { "file" : "Bio/Search/Result/GenericResult.pm", "version" : "1.006924" }, "Bio::Search::Result::HMMERResult" : { "file" : "Bio/Search/Result/HMMERResult.pm", "version" : "1.006924" }, "Bio::Search::Result::HmmpfamResult" : { "file" : "Bio/Search/Result/HmmpfamResult.pm", "version" : "1.006924" }, "Bio::Search::Result::PullResultI" : { "file" : "Bio/Search/Result/PullResultI.pm", "version" : "1.006924" }, "Bio::Search::Result::ResultFactory" : { "file" : "Bio/Search/Result/ResultFactory.pm", "version" : "1.006924" }, "Bio::Search::Result::ResultI" : { "file" : "Bio/Search/Result/ResultI.pm", "version" : "1.006924" }, "Bio::Search::Result::WABAResult" : { "file" : "Bio/Search/Result/WABAResult.pm", "version" : "1.006924" }, "Bio::Search::Result::hmmer3Result" : { "file" : "Bio/Search/Result/hmmer3Result.pm", "version" : "1.006924" }, "Bio::Search::SearchUtils" : { "file" : "Bio/Search/SearchUtils.pm", "version" : "1.006924" }, "Bio::Search::StatisticsI" : { "file" : "Bio/Search/StatisticsI.pm", "version" : "1.006924" }, "Bio::Search::Tiling::MapTileUtils" : { "file" : "Bio/Search/Tiling/MapTileUtils.pm", "version" : "1.006924" }, "Bio::Search::Tiling::MapTiling" : { "file" : "Bio/Search/Tiling/MapTiling.pm", "version" : "1.006924" }, "Bio::Search::Tiling::TilingI" : { "file" : "Bio/Search/Tiling/TilingI.pm", "version" : "1.006924" }, "Bio::SearchDist" : { "file" : "Bio/SearchDist.pm", "version" : "1.006924" }, "Bio::SearchIO" : { "file" : "Bio/SearchIO.pm", "version" : "1.006924" }, "Bio::SearchIO::EventHandlerI" : { "file" : "Bio/SearchIO/EventHandlerI.pm", "version" : "1.006924" }, "Bio::SearchIO::FastHitEventBuilder" : { "file" : "Bio/SearchIO/FastHitEventBuilder.pm", "version" : "1.006924" }, "Bio::SearchIO::IteratedSearchResultEventBuilder" : { "file" : "Bio/SearchIO/IteratedSearchResultEventBuilder.pm", "version" : "1.006924" }, "Bio::SearchIO::SearchResultEventBuilder" : { "file" : "Bio/SearchIO/SearchResultEventBuilder.pm", "version" : "1.006924" }, "Bio::SearchIO::SearchWriterI" : { "file" : "Bio/SearchIO/SearchWriterI.pm", "version" : "1.006924" }, "Bio::SearchIO::Writer::BSMLResultWriter" : { "file" : "Bio/SearchIO/Writer/BSMLResultWriter.pm", "version" : "1.006924" }, "Bio::SearchIO::Writer::GbrowseGFF" : { "file" : "Bio/SearchIO/Writer/GbrowseGFF.pm", "version" : "1.006924" }, "Bio::SearchIO::Writer::HSPTableWriter" : { "file" : "Bio/SearchIO/Writer/HSPTableWriter.pm", "version" : "1.006924" }, "Bio::SearchIO::Writer::HTMLResultWriter" : { "file" : "Bio/SearchIO/Writer/HTMLResultWriter.pm", "version" : "1.006924" }, "Bio::SearchIO::Writer::HitTableWriter" : { "file" : "Bio/SearchIO/Writer/HitTableWriter.pm", "version" : "1.006924" }, "Bio::SearchIO::Writer::ResultTableWriter" : { "file" : "Bio/SearchIO/Writer/ResultTableWriter.pm", "version" : "1.006924" }, "Bio::SearchIO::Writer::TextResultWriter" : { "file" : "Bio/SearchIO/Writer/TextResultWriter.pm", "version" : "1.006924" }, "Bio::SearchIO::XML::BlastHandler" : { "file" : "Bio/SearchIO/XML/BlastHandler.pm", "version" : "1.006924" }, "Bio::SearchIO::XML::PsiBlastHandler" : { "file" : "Bio/SearchIO/XML/PsiBlastHandler.pm", "version" : "1.006924" }, "Bio::SearchIO::axt" : { "file" : "Bio/SearchIO/axt.pm", "version" : "1.006924" }, "Bio::SearchIO::blast" : { "file" : "Bio/SearchIO/blast.pm", "version" : "1.006924" }, "Bio::SearchIO::blast_pull" : { "file" : "Bio/SearchIO/blast_pull.pm", "version" : "1.006924" }, "Bio::SearchIO::blasttable" : { "file" : "Bio/SearchIO/blasttable.pm", "version" : "1.006924" }, "Bio::SearchIO::blastxml" : { "file" : "Bio/SearchIO/blastxml.pm", "version" : "1.006924" }, "Bio::SearchIO::cross_match" : { "file" : "Bio/SearchIO/cross_match.pm", "version" : "1.006924" }, "Bio::SearchIO::erpin" : { "file" : "Bio/SearchIO/erpin.pm", "version" : "1.006924" }, "Bio::SearchIO::exonerate" : { "file" : "Bio/SearchIO/exonerate.pm", "version" : "1.006924" }, "Bio::SearchIO::fasta" : { "file" : "Bio/SearchIO/fasta.pm", "version" : "1.006924" }, "Bio::SearchIO::gmap_f9" : { "file" : "Bio/SearchIO/gmap_f9.pm", "version" : "1.006924" }, "Bio::SearchIO::hmmer" : { "file" : "Bio/SearchIO/hmmer.pm", "version" : "1.006924" }, "Bio::SearchIO::hmmer2" : { "file" : "Bio/SearchIO/hmmer2.pm", "version" : "1.006924" }, "Bio::SearchIO::hmmer3" : { "file" : "Bio/SearchIO/hmmer3.pm", "version" : "1.006924" }, "Bio::SearchIO::hmmer_pull" : { "file" : "Bio/SearchIO/hmmer_pull.pm", "version" : "1.006924" }, "Bio::SearchIO::infernal" : { "file" : "Bio/SearchIO/infernal.pm", "version" : "1.006924" }, "Bio::SearchIO::megablast" : { "file" : "Bio/SearchIO/megablast.pm", "version" : "1.006924" }, "Bio::SearchIO::psl" : { "file" : "Bio/SearchIO/psl.pm", "version" : "1.006924" }, "Bio::SearchIO::rnamotif" : { "file" : "Bio/SearchIO/rnamotif.pm", "version" : "1.006924" }, "Bio::SearchIO::sim4" : { "file" : "Bio/SearchIO/sim4.pm", "version" : "1.006924" }, "Bio::SearchIO::waba" : { "file" : "Bio/SearchIO/waba.pm", "version" : "1.006924" }, "Bio::SearchIO::wise" : { "file" : "Bio/SearchIO/wise.pm", "version" : "1.006924" }, "Bio::Seq" : { "file" : "Bio/Seq.pm", "version" : "1.006924" }, "Bio::Seq::BaseSeqProcessor" : { "file" : "Bio/Seq/BaseSeqProcessor.pm", "version" : "1.006924" }, "Bio::Seq::EncodedSeq" : { "file" : "Bio/Seq/EncodedSeq.pm", "version" : "1.006924" }, "Bio::Seq::LargeLocatableSeq" : { "file" : "Bio/Seq/LargeLocatableSeq.pm", "version" : "1.006924" }, "Bio::Seq::LargePrimarySeq" : { "file" : "Bio/Seq/LargePrimarySeq.pm", "version" : "1.006924" }, "Bio::Seq::LargeSeq" : { "file" : "Bio/Seq/LargeSeq.pm", "version" : "1.006924" }, "Bio::Seq::LargeSeqI" : { "file" : "Bio/Seq/LargeSeqI.pm", "version" : "1.006924" }, "Bio::Seq::Meta" : { "file" : "Bio/Seq/Meta.pm", "version" : "1.006924" }, "Bio::Seq::Meta::Array" : { "file" : "Bio/Seq/Meta/Array.pm", "version" : "1.006924" }, "Bio::Seq::MetaI" : { "file" : "Bio/Seq/MetaI.pm", "version" : "1.006924" }, "Bio::Seq::PrimaryQual" : { "file" : "Bio/Seq/PrimaryQual.pm", "version" : "1.006924" }, "Bio::Seq::PrimaryQual::Qual" : { "file" : "Bio/DB/Qual.pm", "version" : "1.006924" }, "Bio::Seq::PrimedSeq" : { "file" : "Bio/Seq/PrimedSeq.pm", "version" : "1.006924" }, "Bio::Seq::QualI" : { "file" : "Bio/Seq/QualI.pm", "version" : "1.006924" }, "Bio::Seq::Quality" : { "file" : "Bio/Seq/Quality.pm", "version" : "1.006924" }, "Bio::Seq::RichSeq" : { "file" : "Bio/Seq/RichSeq.pm", "version" : "1.006924" }, "Bio::Seq::RichSeqI" : { "file" : "Bio/Seq/RichSeqI.pm", "version" : "1.006924" }, "Bio::Seq::SeqBuilder" : { "file" : "Bio/Seq/SeqBuilder.pm", "version" : "1.006924" }, "Bio::Seq::SeqFactory" : { "file" : "Bio/Seq/SeqFactory.pm", "version" : "1.006924" }, "Bio::Seq::SeqFastaSpeedFactory" : { "file" : "Bio/Seq/SeqFastaSpeedFactory.pm", "version" : "1.006924" }, "Bio::Seq::SeqWithQuality" : { "file" : "Bio/Seq/SeqWithQuality.pm", "version" : "1.006924" }, "Bio::Seq::SequenceTrace" : { "file" : "Bio/Seq/SequenceTrace.pm", "version" : "1.006924" }, "Bio::Seq::SimulatedRead" : { "file" : "Bio/Seq/SimulatedRead.pm", "version" : "1.006924" }, "Bio::Seq::TraceI" : { "file" : "Bio/Seq/TraceI.pm", "version" : "1.006924" }, "Bio::SeqAnalysisParserI" : { "file" : "Bio/SeqAnalysisParserI.pm", "version" : "1.006924" }, "Bio::SeqEvolution::DNAPoint" : { "file" : "Bio/SeqEvolution/DNAPoint.pm", "version" : "1.006924" }, "Bio::SeqEvolution::EvolutionI" : { "file" : "Bio/SeqEvolution/EvolutionI.pm", "version" : "1.006924" }, "Bio::SeqEvolution::Factory" : { "file" : "Bio/SeqEvolution/Factory.pm", "version" : "1.006924" }, "Bio::SeqFeature::Amplicon" : { "file" : "Bio/SeqFeature/Amplicon.pm", "version" : "1.006924" }, "Bio::SeqFeature::AnnotationAdaptor" : { "file" : "Bio/SeqFeature/AnnotationAdaptor.pm", "version" : "1.006924" }, "Bio::SeqFeature::Collection" : { "file" : "Bio/SeqFeature/Collection.pm", "version" : "1.006924" }, "Bio::SeqFeature::CollectionI" : { "file" : "Bio/SeqFeature/CollectionI.pm", "version" : "1.006924" }, "Bio::SeqFeature::Computation" : { "file" : "Bio/SeqFeature/Computation.pm", "version" : "1.006924" }, "Bio::SeqFeature::FeaturePair" : { "file" : "Bio/SeqFeature/FeaturePair.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::Exon" : { "file" : "Bio/SeqFeature/Gene/Exon.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::ExonI" : { "file" : "Bio/SeqFeature/Gene/ExonI.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::GeneStructure" : { "file" : "Bio/SeqFeature/Gene/GeneStructure.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::GeneStructureI" : { "file" : "Bio/SeqFeature/Gene/GeneStructureI.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::Intron" : { "file" : "Bio/SeqFeature/Gene/Intron.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::NC_Feature" : { "file" : "Bio/SeqFeature/Gene/NC_Feature.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::Poly_A_site" : { "file" : "Bio/SeqFeature/Gene/Poly_A_site.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::Promoter" : { "file" : "Bio/SeqFeature/Gene/Promoter.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::Transcript" : { "file" : "Bio/SeqFeature/Gene/Transcript.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::TranscriptI" : { "file" : "Bio/SeqFeature/Gene/TranscriptI.pm", "version" : "1.006924" }, "Bio::SeqFeature::Gene::UTR" : { "file" : "Bio/SeqFeature/Gene/UTR.pm", "version" : "1.006924" }, "Bio::SeqFeature::Generic" : { "file" : "Bio/SeqFeature/Generic.pm", "version" : "1.006924" }, "Bio::SeqFeature::Lite" : { "file" : "Bio/SeqFeature/Lite.pm", "version" : "1.006924" }, "Bio::SeqFeature::PositionProxy" : { "file" : "Bio/SeqFeature/PositionProxy.pm", "version" : "1.006924" }, "Bio::SeqFeature::Primer" : { "file" : "Bio/SeqFeature/Primer.pm", "version" : "1.006924" }, "Bio::SeqFeature::SiRNA::Oligo" : { "file" : "Bio/SeqFeature/SiRNA/Oligo.pm", "version" : "1.006924" }, "Bio::SeqFeature::SiRNA::Pair" : { "file" : "Bio/SeqFeature/SiRNA/Pair.pm", "version" : "1.006924" }, "Bio::SeqFeature::Similarity" : { "file" : "Bio/SeqFeature/Similarity.pm", "version" : "1.006924" }, "Bio::SeqFeature::SimilarityPair" : { "file" : "Bio/SeqFeature/SimilarityPair.pm", "version" : "1.006924" }, "Bio::SeqFeature::SubSeq" : { "file" : "Bio/SeqFeature/SubSeq.pm", "version" : "1.006924" }, "Bio::SeqFeature::Tools::FeatureNamer" : { "file" : "Bio/SeqFeature/Tools/FeatureNamer.pm", "version" : "1.006924" }, "Bio::SeqFeature::Tools::IDHandler" : { "file" : "Bio/SeqFeature/Tools/IDHandler.pm", "version" : "1.006924" }, "Bio::SeqFeature::Tools::TypeMapper" : { "file" : "Bio/SeqFeature/Tools/TypeMapper.pm", "version" : "1.006924" }, "Bio::SeqFeature::Tools::Unflattener" : { "file" : "Bio/SeqFeature/Tools/Unflattener.pm", "version" : "1.006924" }, "Bio::SeqFeature::TypedSeqFeatureI" : { "file" : "Bio/SeqFeature/TypedSeqFeatureI.pm", "version" : "1.006924" }, "Bio::SeqFeatureI" : { "file" : "Bio/SeqFeatureI.pm", "version" : "1.006924" }, "Bio::SeqI" : { "file" : "Bio/SeqI.pm", "version" : "1.006924" }, "Bio::SeqIO" : { "file" : "Bio/SeqIO.pm", "version" : "1.006924" }, "Bio::SeqIO::FTHelper" : { "file" : "Bio/SeqIO/FTHelper.pm", "version" : "1.006924" }, "Bio::SeqIO::Handler::GenericRichSeqHandler" : { "file" : "Bio/SeqIO/Handler/GenericRichSeqHandler.pm", "version" : "1.006924" }, "Bio::SeqIO::MultiFile" : { "file" : "Bio/SeqIO/MultiFile.pm", "version" : "1.006924" }, "Bio::SeqIO::abi" : { "file" : "Bio/SeqIO/abi.pm", "version" : "1.006924" }, "Bio::SeqIO::ace" : { "file" : "Bio/SeqIO/ace.pm", "version" : "1.006924" }, "Bio::SeqIO::agave" : { "file" : "Bio/SeqIO/agave.pm", "version" : "1.006924" }, "Bio::SeqIO::alf" : { "file" : "Bio/SeqIO/alf.pm", "version" : "1.006924" }, "Bio::SeqIO::asciitree" : { "file" : "Bio/SeqIO/asciitree.pm", "version" : "1.006924" }, "Bio::SeqIO::bsml" : { "file" : "Bio/SeqIO/bsml.pm", "version" : "1.006924" }, "Bio::SeqIO::bsml_sax" : { "file" : "Bio/SeqIO/bsml_sax.pm", "version" : "1.006924" }, "Bio::SeqIO::chadoxml" : { "file" : "Bio/SeqIO/chadoxml.pm", "version" : "1.006924" }, "Bio::SeqIO::chaos" : { "file" : "Bio/SeqIO/chaos.pm", "version" : "1.006924" }, "Bio::SeqIO::chaosxml" : { "file" : "Bio/SeqIO/chaosxml.pm", "version" : "1.006924" }, "Bio::SeqIO::ctf" : { "file" : "Bio/SeqIO/ctf.pm", "version" : "1.006924" }, "Bio::SeqIO::embl" : { "file" : "Bio/SeqIO/embl.pm", "version" : "1.006924" }, "Bio::SeqIO::embldriver" : { "file" : "Bio/SeqIO/embldriver.pm", "version" : "1.006924" }, "Bio::SeqIO::entrezgene" : { "file" : "Bio/SeqIO/entrezgene.pm", "version" : "1.006924" }, "Bio::SeqIO::excel" : { "file" : "Bio/SeqIO/excel.pm", "version" : "1.006924" }, "Bio::SeqIO::exp" : { "file" : "Bio/SeqIO/exp.pm", "version" : "1.006924" }, "Bio::SeqIO::fasta" : { "file" : "Bio/SeqIO/fasta.pm", "version" : "1.006924" }, "Bio::SeqIO::fastq" : { "file" : "Bio/SeqIO/fastq.pm", "version" : "1.006924" }, "Bio::SeqIO::flybase_chadoxml" : { "file" : "Bio/SeqIO/flybase_chadoxml.pm", "version" : "1.006924" }, "Bio::SeqIO::game" : { "file" : "Bio/SeqIO/game.pm", "version" : "1.006924" }, "Bio::SeqIO::game::featHandler" : { "file" : "Bio/SeqIO/game/featHandler.pm", "version" : "1.006924" }, "Bio::SeqIO::game::gameHandler" : { "file" : "Bio/SeqIO/game/gameHandler.pm", "version" : "1.006924" }, "Bio::SeqIO::game::gameSubs" : { "file" : "Bio/SeqIO/game/gameSubs.pm", "version" : "1.006924" }, "Bio::SeqIO::game::gameWriter" : { "file" : "Bio/SeqIO/game/gameWriter.pm", "version" : "1.006924" }, "Bio::SeqIO::game::seqHandler" : { "file" : "Bio/SeqIO/game/seqHandler.pm", "version" : "1.006924" }, "Bio::SeqIO::gbdriver" : { "file" : "Bio/SeqIO/gbdriver.pm", "version" : "1.006924" }, "Bio::SeqIO::gbxml" : { "file" : "Bio/SeqIO/gbxml.pm", "version" : "1.006924" }, "Bio::SeqIO::gcg" : { "file" : "Bio/SeqIO/gcg.pm", "version" : "1.006924" }, "Bio::SeqIO::genbank" : { "file" : "Bio/SeqIO/genbank.pm", "version" : "1.006924" }, "Bio::SeqIO::interpro" : { "file" : "Bio/SeqIO/interpro.pm", "version" : "1.006924" }, "Bio::SeqIO::kegg" : { "file" : "Bio/SeqIO/kegg.pm", "version" : "1.006924" }, "Bio::SeqIO::largefasta" : { "file" : "Bio/SeqIO/largefasta.pm", "version" : "1.006924" }, "Bio::SeqIO::lasergene" : { "file" : "Bio/SeqIO/lasergene.pm", "version" : "1.006924" }, "Bio::SeqIO::locuslink" : { "file" : "Bio/SeqIO/locuslink.pm", "version" : "1.006924" }, "Bio::SeqIO::mbsout" : { "file" : "Bio/SeqIO/mbsout.pm", "version" : "1.006924" }, "Bio::SeqIO::metafasta" : { "file" : "Bio/SeqIO/metafasta.pm", "version" : "1.006924" }, "Bio::SeqIO::msout" : { "file" : "Bio/SeqIO/msout.pm", "version" : "1.006924" }, "Bio::SeqIO::nexml" : { "file" : "Bio/SeqIO/nexml.pm", "version" : "1.006924" }, "Bio::SeqIO::phd" : { "file" : "Bio/SeqIO/phd.pm", "version" : "1.006924" }, "Bio::SeqIO::pir" : { "file" : "Bio/SeqIO/pir.pm", "version" : "1.006924" }, "Bio::SeqIO::pln" : { "file" : "Bio/SeqIO/pln.pm", "version" : "1.006924" }, "Bio::SeqIO::qual" : { "file" : "Bio/SeqIO/qual.pm", "version" : "1.006924" }, "Bio::SeqIO::raw" : { "file" : "Bio/SeqIO/raw.pm", "version" : "1.006924" }, "Bio::SeqIO::scf" : { "file" : "Bio/SeqIO/scf.pm", "version" : "1.006924" }, "Bio::SeqIO::seqxml" : { "file" : "Bio/SeqIO/seqxml.pm", "version" : "1.006924" }, "Bio::SeqIO::strider" : { "file" : "Bio/SeqIO/strider.pm", "version" : "1.006924" }, "Bio::SeqIO::swiss" : { "file" : "Bio/SeqIO/swiss.pm", "version" : "1.006924" }, "Bio::SeqIO::swissdriver" : { "file" : "Bio/SeqIO/swissdriver.pm", "version" : "1.006924" }, "Bio::SeqIO::tab" : { "file" : "Bio/SeqIO/tab.pm", "version" : "1.006924" }, "Bio::SeqIO::table" : { "file" : "Bio/SeqIO/table.pm", "version" : "1.006924" }, "Bio::SeqIO::tigr" : { "file" : "Bio/SeqIO/tigr.pm", "version" : "1.006924" }, "Bio::SeqIO::tigrxml" : { "file" : "Bio/SeqIO/tigrxml.pm", "version" : "1.006924" }, "Bio::SeqIO::tinyseq" : { "file" : "Bio/SeqIO/tinyseq.pm", "version" : "1.006924" }, "Bio::SeqIO::tinyseq::tinyseqHandler" : { "file" : "Bio/SeqIO/tinyseq/tinyseqHandler.pm", "version" : "1.006924" }, "Bio::SeqIO::ztr" : { "file" : "Bio/SeqIO/ztr.pm", "version" : "1.006924" }, "Bio::SeqUtils" : { "file" : "Bio/SeqUtils.pm", "version" : "1.006924" }, "Bio::SimpleAlign" : { "file" : "Bio/SimpleAlign.pm", "version" : "1.006924" }, "Bio::SimpleAnalysisI" : { "file" : "Bio/SimpleAnalysisI.pm", "version" : "1.006924" }, "Bio::Species" : { "file" : "Bio/Species.pm", "version" : "1.006924" }, "Bio::Structure::Atom" : { "file" : "Bio/Structure/Atom.pm", "version" : "1.006924" }, "Bio::Structure::Chain" : { "file" : "Bio/Structure/Chain.pm", "version" : "1.006924" }, "Bio::Structure::Entry" : { "file" : "Bio/Structure/Entry.pm", "version" : "1.006924" }, "Bio::Structure::IO" : { "file" : "Bio/Structure/IO.pm", "version" : "1.006924" }, "Bio::Structure::IO::pdb" : { "file" : "Bio/Structure/IO/pdb.pm", "version" : "1.006924" }, "Bio::Structure::Model" : { "file" : "Bio/Structure/Model.pm", "version" : "1.006924" }, "Bio::Structure::Residue" : { "file" : "Bio/Structure/Residue.pm", "version" : "1.006924" }, "Bio::Structure::SecStr::DSSP::Res" : { "file" : "Bio/Structure/SecStr/DSSP/Res.pm", "version" : "1.006924" }, "Bio::Structure::SecStr::STRIDE::Res" : { "file" : "Bio/Structure/SecStr/STRIDE/Res.pm", "version" : "1.006924" }, "Bio::Structure::StructureI" : { "file" : "Bio/Structure/StructureI.pm", "version" : "1.006924" }, "Bio::Symbol::Alphabet" : { "file" : "Bio/Symbol/Alphabet.pm", "version" : "1.006924" }, "Bio::Symbol::AlphabetI" : { "file" : "Bio/Symbol/AlphabetI.pm", "version" : "1.006924" }, "Bio::Symbol::DNAAlphabet" : { "file" : "Bio/Symbol/DNAAlphabet.pm", "version" : "1.006924" }, "Bio::Symbol::ProteinAlphabet" : { "file" : "Bio/Symbol/ProteinAlphabet.pm", "version" : "1.006924" }, "Bio::Symbol::Symbol" : { "file" : "Bio/Symbol/Symbol.pm", "version" : "1.006924" }, "Bio::Symbol::SymbolI" : { "file" : "Bio/Symbol/SymbolI.pm", "version" : "1.006924" }, "Bio::Taxon" : { "file" : "Bio/Taxon.pm", "version" : "1.006924" }, "Bio::Taxonomy" : { "file" : "Bio/Taxonomy.pm", "version" : "1.006924" }, "Bio::Taxonomy::FactoryI" : { "file" : "Bio/Taxonomy/FactoryI.pm", "version" : "1.006924" }, "Bio::Taxonomy::Node" : { "file" : "Bio/Taxonomy/Node.pm", "version" : "1.006924" }, "Bio::Taxonomy::Taxon" : { "file" : "Bio/Taxonomy/Taxon.pm", "version" : "1.006924" }, "Bio::Taxonomy::Tree" : { "file" : "Bio/Taxonomy/Tree.pm", "version" : "1.006924" }, "Bio::Tools::AlignFactory" : { "file" : "Bio/Tools/AlignFactory.pm", "version" : "1.006924" }, "Bio::Tools::Alignment::Consed" : { "file" : "Bio/Tools/Alignment/Consed.pm", "version" : "1.006924" }, "Bio::Tools::Alignment::Trim" : { "file" : "Bio/Tools/Alignment/Trim.pm", "version" : "1.006924" }, "Bio::Tools::AmpliconSearch" : { "file" : "Bio/Tools/AmpliconSearch.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::DNA::ESEfinder" : { "file" : "Bio/Tools/Analysis/DNA/ESEfinder.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::Protein::Domcut" : { "file" : "Bio/Tools/Analysis/Protein/Domcut.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::Protein::ELM" : { "file" : "Bio/Tools/Analysis/Protein/ELM.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::Protein::GOR4" : { "file" : "Bio/Tools/Analysis/Protein/GOR4.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::Protein::HNN" : { "file" : "Bio/Tools/Analysis/Protein/HNN.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::Protein::Mitoprot" : { "file" : "Bio/Tools/Analysis/Protein/Mitoprot.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::Protein::NetPhos" : { "file" : "Bio/Tools/Analysis/Protein/NetPhos.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::Protein::Scansite" : { "file" : "Bio/Tools/Analysis/Protein/Scansite.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::Protein::Sopma" : { "file" : "Bio/Tools/Analysis/Protein/Sopma.pm", "version" : "1.006924" }, "Bio::Tools::Analysis::SimpleAnalysisBase" : { "file" : "Bio/Tools/Analysis/SimpleAnalysisBase.pm", "version" : "1.006924" }, "Bio::Tools::AnalysisResult" : { "file" : "Bio/Tools/AnalysisResult.pm", "version" : "1.006924" }, "Bio::Tools::Blat" : { "file" : "Bio/Tools/Blat.pm", "version" : "1.006924" }, "Bio::Tools::CodonTable" : { "file" : "Bio/Tools/CodonTable.pm", "version" : "1.006924" }, "Bio::Tools::Coil" : { "file" : "Bio/Tools/Coil.pm", "version" : "1.006924" }, "Bio::Tools::ECnumber" : { "file" : "Bio/Tools/ECnumber.pm", "version" : "1.006924" }, "Bio::Tools::EMBOSS::Palindrome" : { "file" : "Bio/Tools/EMBOSS/Palindrome.pm", "version" : "1.006924" }, "Bio::Tools::EPCR" : { "file" : "Bio/Tools/EPCR.pm", "version" : "1.006924" }, "Bio::Tools::ERPIN" : { "file" : "Bio/Tools/ERPIN.pm", "version" : "1.006924" }, "Bio::Tools::ESTScan" : { "file" : "Bio/Tools/ESTScan.pm", "version" : "1.006924" }, "Bio::Tools::Eponine" : { "file" : "Bio/Tools/Eponine.pm", "version" : "1.006924" }, "Bio::Tools::Est2Genome" : { "file" : "Bio/Tools/Est2Genome.pm", "version" : "1.006924" }, "Bio::Tools::Fgenesh" : { "file" : "Bio/Tools/Fgenesh.pm", "version" : "1.006924" }, "Bio::Tools::FootPrinter" : { "file" : "Bio/Tools/FootPrinter.pm", "version" : "1.006924" }, "Bio::Tools::GFF" : { "file" : "Bio/Tools/GFF.pm", "version" : "1.006924" }, "Bio::Tools::Gel" : { "file" : "Bio/Tools/Gel.pm", "version" : "1.006924" }, "Bio::Tools::Geneid" : { "file" : "Bio/Tools/Geneid.pm", "version" : "1.006924" }, "Bio::Tools::Genemark" : { "file" : "Bio/Tools/Genemark.pm", "version" : "1.006924" }, "Bio::Tools::Genewise" : { "file" : "Bio/Tools/Genewise.pm", "version" : "1.006924" }, "Bio::Tools::Genomewise" : { "file" : "Bio/Tools/Genomewise.pm", "version" : "1.006924" }, "Bio::Tools::Genscan" : { "file" : "Bio/Tools/Genscan.pm", "version" : "1.006924" }, "Bio::Tools::Glimmer" : { "file" : "Bio/Tools/Glimmer.pm", "version" : "1.006924" }, "Bio::Tools::Grail" : { "file" : "Bio/Tools/Grail.pm", "version" : "1.006924" }, "Bio::Tools::GuessSeqFormat" : { "file" : "Bio/Tools/GuessSeqFormat.pm", "version" : "1.006924" }, "Bio::Tools::HMMER::Domain" : { "file" : "Bio/Tools/HMMER/Domain.pm", "version" : "1.006924" }, "Bio::Tools::HMMER::Results" : { "file" : "Bio/Tools/HMMER/Results.pm", "version" : "1.006924" }, "Bio::Tools::HMMER::Set" : { "file" : "Bio/Tools/HMMER/Set.pm", "version" : "1.006924" }, "Bio::Tools::Hmmpfam" : { "file" : "Bio/Tools/Hmmpfam.pm", "version" : "1.006924" }, "Bio::Tools::IUPAC" : { "file" : "Bio/Tools/IUPAC.pm", "version" : "1.006924" }, "Bio::Tools::Infernal" : { "file" : "Bio/Tools/Infernal.pm", "version" : "1.006924" }, "Bio::Tools::Lucy" : { "file" : "Bio/Tools/Lucy.pm", "version" : "1.006924" }, "Bio::Tools::MZEF" : { "file" : "Bio/Tools/MZEF.pm", "version" : "1.006924" }, "Bio::Tools::Match" : { "file" : "Bio/Tools/Match.pm", "version" : "1.006924" }, "Bio::Tools::OddCodes" : { "file" : "Bio/Tools/OddCodes.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::Gerp" : { "file" : "Bio/Tools/Phylo/Gerp.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::Gumby" : { "file" : "Bio/Tools/Phylo/Gumby.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::Molphy" : { "file" : "Bio/Tools/Phylo/Molphy.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::Molphy::Result" : { "file" : "Bio/Tools/Phylo/Molphy/Result.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::PAML" : { "file" : "Bio/Tools/Phylo/PAML.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::PAML::Codeml" : { "file" : "Bio/Tools/Phylo/PAML/Codeml.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::PAML::ModelResult" : { "file" : "Bio/Tools/Phylo/PAML/ModelResult.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::PAML::Result" : { "file" : "Bio/Tools/Phylo/PAML/Result.pm", "version" : "1.006924" }, "Bio::Tools::Phylo::Phylip::ProtDist" : { "file" : "Bio/Tools/Phylo/Phylip/ProtDist.pm", "version" : "1.006924" }, "Bio::Tools::Prediction::Exon" : { "file" : "Bio/Tools/Prediction/Exon.pm", "version" : "1.006924" }, "Bio::Tools::Prediction::Gene" : { "file" : "Bio/Tools/Prediction/Gene.pm", "version" : "1.006924" }, "Bio::Tools::Primer3" : { "file" : "Bio/Tools/Primer3.pm", "version" : "1.006924" }, "Bio::Tools::Primer::Assessor::Base" : { "file" : "Bio/Tools/Primer/Assessor/Base.pm", "version" : "1.006924" }, "Bio::Tools::Primer::AssessorI" : { "file" : "Bio/Tools/Primer/AssessorI.pm", "version" : "1.006924" }, "Bio::Tools::Primer::Feature" : { "file" : "Bio/Tools/Primer/Feature.pm", "version" : "1.006924" }, "Bio::Tools::Primer::Pair" : { "file" : "Bio/Tools/Primer/Pair.pm", "version" : "1.006924" }, "Bio::Tools::Prints" : { "file" : "Bio/Tools/Prints.pm", "version" : "1.006924" }, "Bio::Tools::Profile" : { "file" : "Bio/Tools/Profile.pm", "version" : "1.006924" }, "Bio::Tools::Promoterwise" : { "file" : "Bio/Tools/Promoterwise.pm", "version" : "1.006924" }, "Bio::Tools::PrositeScan" : { "file" : "Bio/Tools/PrositeScan.pm", "version" : "1.006924" }, "Bio::Tools::Protparam" : { "file" : "Bio/Tools/Protparam.pm", "version" : "1.006924" }, "Bio::Tools::Pseudowise" : { "file" : "Bio/Tools/Pseudowise.pm", "version" : "1.006924" }, "Bio::Tools::QRNA" : { "file" : "Bio/Tools/QRNA.pm", "version" : "1.006924" }, "Bio::Tools::RNAMotif" : { "file" : "Bio/Tools/RNAMotif.pm", "version" : "1.006924" }, "Bio::Tools::RandomDistFunctions" : { "file" : "Bio/Tools/RandomDistFunctions.pm", "version" : "1.006924" }, "Bio::Tools::RepeatMasker" : { "file" : "Bio/Tools/RepeatMasker.pm", "version" : "1.006924" }, "Bio::Tools::Run::GenericParameters" : { "file" : "Bio/Tools/Run/GenericParameters.pm", "version" : "1.006924" }, "Bio::Tools::Run::ParametersI" : { "file" : "Bio/Tools/Run/ParametersI.pm", "version" : "1.006924" }, "Bio::Tools::Run::RemoteBlast" : { "file" : "Bio/Tools/Run/RemoteBlast.pm", "version" : "1.006924" }, "Bio::Tools::Run::StandAloneBlast" : { "file" : "Bio/Tools/Run/StandAloneBlast.pm", "version" : "1.006924" }, "Bio::Tools::Run::StandAloneNCBIBlast" : { "file" : "Bio/Tools/Run/StandAloneNCBIBlast.pm", "version" : "1.006924" }, "Bio::Tools::Run::StandAloneWUBlast" : { "file" : "Bio/Tools/Run/StandAloneWUBlast.pm", "version" : "1.006924" }, "Bio::Tools::Run::WrapperBase" : { "file" : "Bio/Tools/Run/WrapperBase.pm", "version" : "1.006924" }, "Bio::Tools::Seg" : { "file" : "Bio/Tools/Seg.pm", "version" : "1.006924" }, "Bio::Tools::SeqPattern" : { "file" : "Bio/Tools/SeqPattern.pm", "version" : "1.006924" }, "Bio::Tools::SeqPattern::Backtranslate" : { "file" : "Bio/Tools/SeqPattern/Backtranslate.pm", "version" : "1.006924" }, "Bio::Tools::SeqStats" : { "file" : "Bio/Tools/SeqStats.pm", "version" : "1.006924" }, "Bio::Tools::SeqWords" : { "file" : "Bio/Tools/SeqWords.pm", "version" : "1.006924" }, "Bio::Tools::SiRNA" : { "file" : "Bio/Tools/SiRNA.pm", "version" : "1.006924" }, "Bio::Tools::SiRNA::Ruleset::saigo" : { "file" : "Bio/Tools/SiRNA/Ruleset/saigo.pm", "version" : "1.006924" }, "Bio::Tools::SiRNA::Ruleset::tuschl" : { "file" : "Bio/Tools/SiRNA/Ruleset/tuschl.pm", "version" : "1.006924" }, "Bio::Tools::Sigcleave" : { "file" : "Bio/Tools/Sigcleave.pm", "version" : "1.006924" }, "Bio::Tools::Signalp" : { "file" : "Bio/Tools/Signalp.pm", "version" : "1.006924" }, "Bio::Tools::Signalp::ExtendedSignalp" : { "file" : "Bio/Tools/Signalp/ExtendedSignalp.pm", "version" : "1.006924" }, "Bio::Tools::Sim4::Exon" : { "file" : "Bio/Tools/Sim4/Exon.pm", "version" : "1.006924" }, "Bio::Tools::Sim4::Results" : { "file" : "Bio/Tools/Sim4/Results.pm", "version" : "1.006924" }, "Bio::Tools::Spidey::Exon" : { "file" : "Bio/Tools/Spidey/Exon.pm", "version" : "1.006924" }, "Bio::Tools::Spidey::Results" : { "file" : "Bio/Tools/Spidey/Results.pm", "version" : "1.006924" }, "Bio::Tools::TandemRepeatsFinder" : { "file" : "Bio/Tools/TandemRepeatsFinder.pm", "version" : "1.006924" }, "Bio::Tools::TargetP" : { "file" : "Bio/Tools/TargetP.pm", "version" : "1.006924" }, "Bio::Tools::Tmhmm" : { "file" : "Bio/Tools/Tmhmm.pm", "version" : "1.006924" }, "Bio::Tools::dpAlign" : { "file" : "Bio/Tools/dpAlign.pm", "version" : "1.006924" }, "Bio::Tools::ipcress" : { "file" : "Bio/Tools/ipcress.pm", "version" : "1.006924" }, "Bio::Tools::isPcr" : { "file" : "Bio/Tools/isPcr.pm", "version" : "1.006924" }, "Bio::Tools::pICalculator" : { "file" : "Bio/Tools/pICalculator.pm", "version" : "1.006924" }, "Bio::Tools::pSW" : { "file" : "Bio/Tools/pSW.pm", "version" : "1.006924" }, "Bio::Tools::tRNAscanSE" : { "file" : "Bio/Tools/tRNAscanSE.pm", "version" : "1.006924" }, "Bio::Tree::AlleleNode" : { "file" : "Bio/Tree/AlleleNode.pm", "version" : "1.006924" }, "Bio::Tree::AnnotatableNode" : { "file" : "Bio/Tree/AnnotatableNode.pm", "version" : "1.006924" }, "Bio::Tree::Compatible" : { "file" : "Bio/Tree/Compatible.pm", "version" : "1.006924" }, "Bio::Tree::DistanceFactory" : { "file" : "Bio/Tree/DistanceFactory.pm", "version" : "1.006924" }, "Bio::Tree::Draw::Cladogram" : { "file" : "Bio/Tree/Draw/Cladogram.pm", "version" : "1.006924" }, "Bio::Tree::Node" : { "file" : "Bio/Tree/Node.pm", "version" : "1.006924" }, "Bio::Tree::NodeI" : { "file" : "Bio/Tree/NodeI.pm", "version" : "1.006924" }, "Bio::Tree::NodeNHX" : { "file" : "Bio/Tree/NodeNHX.pm", "version" : "1.006924" }, "Bio::Tree::RandomFactory" : { "file" : "Bio/Tree/RandomFactory.pm", "version" : "1.006924" }, "Bio::Tree::Statistics" : { "file" : "Bio/Tree/Statistics.pm", "version" : "1.006924" }, "Bio::Tree::Tree" : { "file" : "Bio/Tree/Tree.pm", "version" : "1.006924" }, "Bio::Tree::TreeFunctionsI" : { "file" : "Bio/Tree/TreeFunctionsI.pm", "version" : "1.006924" }, "Bio::Tree::TreeI" : { "file" : "Bio/Tree/TreeI.pm", "version" : "1.006924" }, "Bio::TreeIO" : { "file" : "Bio/TreeIO.pm", "version" : "1.006924" }, "Bio::TreeIO::NewickParser" : { "file" : "Bio/TreeIO/NewickParser.pm", "version" : "1.006924" }, "Bio::TreeIO::TreeEventBuilder" : { "file" : "Bio/TreeIO/TreeEventBuilder.pm", "version" : "1.006924" }, "Bio::TreeIO::cluster" : { "file" : "Bio/TreeIO/cluster.pm", "version" : "1.006924" }, "Bio::TreeIO::lintree" : { "file" : "Bio/TreeIO/lintree.pm", "version" : "1.006924" }, "Bio::TreeIO::newick" : { "file" : "Bio/TreeIO/newick.pm", "version" : "1.006924" }, "Bio::TreeIO::nexml" : { "file" : "Bio/TreeIO/nexml.pm", "version" : "1.006924" }, "Bio::TreeIO::nexus" : { "file" : "Bio/TreeIO/nexus.pm", "version" : "1.006924" }, "Bio::TreeIO::nhx" : { "file" : "Bio/TreeIO/nhx.pm", "version" : "1.006924" }, "Bio::TreeIO::pag" : { "file" : "Bio/TreeIO/pag.pm", "version" : "1.006924" }, "Bio::TreeIO::phyloxml" : { "file" : "Bio/TreeIO/phyloxml.pm", "version" : "1.006924" }, "Bio::TreeIO::svggraph" : { "file" : "Bio/TreeIO/svggraph.pm", "version" : "1.006924" }, "Bio::TreeIO::tabtree" : { "file" : "Bio/TreeIO/tabtree.pm", "version" : "1.006924" }, "Bio::UpdateableSeqI" : { "file" : "Bio/UpdateableSeqI.pm", "version" : "1.006924" }, "Bio::Variation::AAChange" : { "file" : "Bio/Variation/AAChange.pm", "version" : "1.006924" }, "Bio::Variation::AAReverseMutate" : { "file" : "Bio/Variation/AAReverseMutate.pm", "version" : "1.006924" }, "Bio::Variation::Allele" : { "file" : "Bio/Variation/Allele.pm", "version" : "1.006924" }, "Bio::Variation::DNAMutation" : { "file" : "Bio/Variation/DNAMutation.pm", "version" : "1.006924" }, "Bio::Variation::IO" : { "file" : "Bio/Variation/IO.pm", "version" : "1.006924" }, "Bio::Variation::IO::flat" : { "file" : "Bio/Variation/IO/flat.pm", "version" : "1.006924" }, "Bio::Variation::IO::xml" : { "file" : "Bio/Variation/IO/xml.pm", "version" : "1.006924" }, "Bio::Variation::RNAChange" : { "file" : "Bio/Variation/RNAChange.pm", "version" : "1.006924" }, "Bio::Variation::SNP" : { "file" : "Bio/Variation/SNP.pm", "version" : "1.006924" }, "Bio::Variation::SeqDiff" : { "file" : "Bio/Variation/SeqDiff.pm", "version" : "1.006924" }, "Bio::Variation::VariantI" : { "file" : "Bio/Variation/VariantI.pm", "version" : "1.006924" }, "Bio::WebAgent" : { "file" : "Bio/WebAgent.pm", "version" : "1.006924" }, "FeatureStore" : { "file" : "Bio/DB/GFF/Adaptor/berkeleydb.pm", "version" : "1.006924" } }, "release_status" : "stable", "resources" : { "license" : [ "http://dev.perl.org/licenses/" ] }, "version" : "1.006924" }